Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1133X
         (482 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_01_0162 - 1126273-1126593,1126950-1127117,1127211-1127501,112...    30   1.1  
01_01_0588 + 4372877-4372949,4374328-4376262,4376940-4377015,437...    29   2.0  
06_01_0417 - 2972877-2973876,2973946-2974851,2975823-2976616,297...    27   6.0  
04_03_0479 - 16420948-16421238,16421519-16421764,16422676-164228...    27   6.0  
05_07_0364 - 29611149-29611211,29611441-29611623,29611796-296118...    27   7.9  

>02_01_0162 -
           1126273-1126593,1126950-1127117,1127211-1127501,
           1127688-1127763,1127841-1127886,1128006-1128072,
           1128162-1128234,1128321-1128561,1128669-1128822,
           1128915-1129042,1129481-1129535,1129629-1129838
          Length = 609

 Score = 29.9 bits (64), Expect = 1.1
 Identities = 22/61 (36%), Positives = 35/61 (57%), Gaps = 6/61 (9%)
 Frame = +2

Query: 149 RDVKRRR----LSAENFL--GRTRVNALRKNDILPVEIREIVTSKSISLNGMPHL*ELTT 310
           R VK+RR    +S++ FL    TR NA+ +      +  E+V    +SL+ +PHL EL++
Sbjct: 103 RHVKKRRHLSAISSQTFLMDRETRCNAIPQLANHFSKEEEVVVDALLSLSQIPHLCELSS 162

Query: 311 D 313
           D
Sbjct: 163 D 163


>01_01_0588 + 4372877-4372949,4374328-4376262,4376940-4377015,
            4378900-4378970,4379038-4379144,4379241-4379711,
            4379791-4379976,4380132-4380425,4380820-4381434,
            4382219-4382615,4382768-4382850,4383397-4383567,
            4384046-4384243,4384754-4385314,4385401-4385460,
            4385553-4385869,4385980-4386403,4386539-4387006,
            4387093-4387209,4387306-4387427,4387506-4388247,
            4388453-4388485,4388625-4388879,4388975-4389160,
            4390115-4390453,4391293-4392045
          Length = 3017

 Score = 29.1 bits (62), Expect = 2.0
 Identities = 16/46 (34%), Positives = 22/46 (47%), Gaps = 2/46 (4%)
 Frame = +2

Query: 125  KWANWLMIRDVKRRRLSAE--NFLGRTRVNALRKNDILPVEIREIV 256
            KWA WL+   VK     A   N L       +R N++  +EI EI+
Sbjct: 1280 KWAQWLLFSRVKGYEYEASFCNALWNLSQEMVRHNNLAAIEIDEIL 1325


>06_01_0417 -
           2972877-2973876,2973946-2974851,2975823-2976616,
           2977887-2977977,2978305-2978384
          Length = 956

 Score = 27.5 bits (58), Expect = 6.0
 Identities = 14/35 (40%), Positives = 21/35 (60%), Gaps = 2/35 (5%)
 Frame = +2

Query: 101 VGYQQVRNKWANWLMIRDVKRRRLSAENF--LGRT 199
           VG  + RN+  +WLM  D++ R L+   F  LG+T
Sbjct: 200 VGIDEPRNELVSWLMEEDLRLRVLAIVGFGGLGKT 234


>04_03_0479 -
           16420948-16421238,16421519-16421764,16422676-16422811,
           16422903-16423121,16423715-16423748,16424092-16424335
          Length = 389

 Score = 27.5 bits (58), Expect = 6.0
 Identities = 14/40 (35%), Positives = 24/40 (60%)
 Frame = +1

Query: 25  LGKYYNELKYLNFRKIHSKITINSRSRVSTSTE*MG*LAH 144
           L K+YNEL   NF++   ++ IN + RV+ + +    L+H
Sbjct: 179 LKKFYNELLN-NFKEFEDQVAINDKYRVAYAKKEFQKLSH 217


>05_07_0364 -
           29611149-29611211,29611441-29611623,29611796-29611853,
           29612150-29612207,29612504-29612561,29612859-29612916,
           29613214-29613271,29613568-29613625,29613923-29613980,
           29614277-29614334,29614631-29614688,29614983-29615040,
           29615337-29615394,29615691-29615748,29616045-29616102,
           29616400-29616457,29616755-29616812,29617109-29617166,
           29617463-29617520,29617817-29617874,29618171-29618228,
           29618525-29618582,29618878-29618935,29619233-29619290,
           29619942-29619999,29620297-29620376,29620649-29620706,
           29621001-29621058,29621353-29621410,29621707-29621764,
           29622415-29622472,29622767-29622824,29623121-29623164,
           29623475-29623532,29623829-29623886,29624537-29624594,
           29624889-29624946,29625243-29625300,29625597-29625654,
           29626305-29626400,29626697-29626792,29627797-29627892,
           29628188-29628283,29629996-29630053,29630350-29630407,
           29630704-29630799,29631096-29631191,29632196-29632253,
           29632549-29632644,29633648-29633743,29634040-29634042
          Length = 1114

 Score = 27.1 bits (57), Expect = 7.9
 Identities = 13/36 (36%), Positives = 19/36 (52%)
 Frame = -2

Query: 430 SPT*PSVLLRVCCNPLDASRLYDSCAIPLLYLWVVK 323
           SP  P +L  +CC PLD  R  ++ A     LW ++
Sbjct: 888 SPKQP-LLRSLCCGPLDIRRFAETTAASWPMLWTLR 922


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,380,072
Number of Sequences: 37544
Number of extensions: 214505
Number of successful extensions: 506
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 473
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 506
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 987904180
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)