Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1133X
         (482 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_16542| Best HMM Match : Ribosomal_S14 (HMM E-Value=9.4e-13)         56   1e-08
SB_9534| Best HMM Match : No HMM Matches (HMM E-Value=.)               30   1.1  
SB_23867| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.7  
SB_19767| Best HMM Match : ADK (HMM E-Value=0.26)                      29   2.7  
SB_36117| Best HMM Match : Rubredoxin (HMM E-Value=1.8)                28   3.5  
SB_19421| Best HMM Match : Ribosomal_L36 (HMM E-Value=0.85)            27   6.1  
SB_30331| Best HMM Match : Amidase (HMM E-Value=0)                     27   8.1  

>SB_16542| Best HMM Match : Ribosomal_S14 (HMM E-Value=9.4e-13)
          Length = 86

 Score = 56.4 bits (130), Expect = 1e-08
 Identities = 22/61 (36%), Positives = 44/61 (72%)
 Frame = +1

Query: 244 QRDSDKQINQFEWNATPMRINNRCVITSRPRGIVKEWRMSRIVWRHLADYNKLSGVQRAM 423
           ++++  ++ +   N++  RI NRCV+T R RGIV  +R+SR+++R+ A+  +++GV++A 
Sbjct: 26  RKNAANEMKELPLNSSLTRIRNRCVMTDRGRGIVGRFRVSRMMFRYFAERGQIAGVKKAQ 85

Query: 424 W 426
           W
Sbjct: 86  W 86


>SB_9534| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 740

 Score = 29.9 bits (64), Expect = 1.1
 Identities = 14/29 (48%), Positives = 20/29 (68%)
 Frame = +3

Query: 345 KGMAHESYSLEASSGLQQTLRSTEGYVGL 431
           KGMA + + +E  +G   TLR++EGY GL
Sbjct: 90  KGMAPDPFLVEFINGPMFTLRASEGYRGL 118


>SB_23867| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1152

 Score = 28.7 bits (61), Expect = 2.7
 Identities = 13/39 (33%), Positives = 19/39 (48%)
 Frame = +2

Query: 116 VRNKWANWLMIRDVKRRRLSAENFLGRTRVNALRKNDIL 232
           +RN W NWL    +KR R    +F   + VN +   + L
Sbjct: 313 MRNGWGNWL-ASQIKRDRPQGSSFQASSMVNCMLHTEFL 350


>SB_19767| Best HMM Match : ADK (HMM E-Value=0.26)
          Length = 336

 Score = 28.7 bits (61), Expect = 2.7
 Identities = 13/39 (33%), Positives = 19/39 (48%)
 Frame = +2

Query: 116 VRNKWANWLMIRDVKRRRLSAENFLGRTRVNALRKNDIL 232
           +RN W NWL    +KR R    +F   + VN +   + L
Sbjct: 190 MRNGWGNWL-ASQIKRDRPQGSSFQASSMVNCMLHTEFL 227


>SB_36117| Best HMM Match : Rubredoxin (HMM E-Value=1.8)
          Length = 996

 Score = 28.3 bits (60), Expect = 3.5
 Identities = 12/56 (21%), Positives = 25/56 (44%), Gaps = 2/56 (3%)
 Frame = -2

Query: 289 WHSIQTD*--FACHYLSDFNREDVIFPQCINSGPSKKVLCTQSTPLYITNHEPVSP 128
           W  + +D   F C  ++  +  D+  P  +++   ++VL      +Y T H  + P
Sbjct: 209 WRVVPSDLYDFLCFLITSLDNLDISNPTAVSATDERRVLAIAQDLVYFTTHARIKP 264


>SB_19421| Best HMM Match : Ribosomal_L36 (HMM E-Value=0.85)
          Length = 647

 Score = 27.5 bits (58), Expect = 6.1
 Identities = 11/33 (33%), Positives = 20/33 (60%)
 Frame = +2

Query: 29  ENTIMNLNISILGKFILKSQSIAGVGYQQVRNK 127
           +N   + ++S LGK  LK +    VG+Q+ R++
Sbjct: 274 QNNNQSTDVSKLGKISLKKEEFESVGHQKARSQ 306


>SB_30331| Best HMM Match : Amidase (HMM E-Value=0)
          Length = 555

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 21/58 (36%), Positives = 30/58 (51%), Gaps = 4/58 (6%)
 Frame = +2

Query: 179 ENFLGRTRVNALRKNDIL--PVEIREIVTSKSISLNGMPHL*ELT--TDVLSLHDPEV 340
           +  LG   +N+  K ++L  P+    I   +SIS  GMPH   L    +V+S HD EV
Sbjct: 123 DEILGN-ELNSEEKKELLAKPLLGVPITVKESISCRGMPHSSGLVERKNVISEHDSEV 179


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,361,390
Number of Sequences: 59808
Number of extensions: 254792
Number of successful extensions: 547
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 528
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 547
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1013948003
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)