Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1133X
         (482 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z48809-3|CAA88746.2|  199|Caenorhabditis elegans Hypothetical pr...    52   2e-07
Z70756-3|CAC42337.1| 2514|Caenorhabditis elegans Hypothetical pr...    27   5.4  
Z70756-2|CAA94790.2| 2531|Caenorhabditis elegans Hypothetical pr...    27   5.4  
AB018598-1|BAA33886.1| 2514|Caenorhabditis elegans ATM-like prot...    27   5.4  

>Z48809-3|CAA88746.2|  199|Caenorhabditis elegans Hypothetical
           protein T01E8.6 protein.
          Length = 199

 Score = 52.0 bits (119), Expect = 2e-07
 Identities = 24/45 (53%), Positives = 30/45 (66%)
 Frame = +1

Query: 292 PMRINNRCVITSRPRGIVKEWRMSRIVWRHLADYNKLSGVQRAMW 426
           P  I N C  T R RG +K +R+SR ++R  AD + LSGVQRAMW
Sbjct: 155 PRLILNMCQFTGRQRGKIKPYRLSRHLFRRFADRSALSGVQRAMW 199



 Score = 41.9 bits (94), Expect = 2e-04
 Identities = 20/46 (43%), Positives = 26/46 (56%)
 Frame = +2

Query: 128 WANWLMIRDVKRRRLSAENFLGRTRVNALRKNDILPVEIREIVTSK 265
           WA+W  +RDVKRR    E    R R+ A++ N ILP  IR+    K
Sbjct: 100 WASWRQLRDVKRREQIQEVGADRMRLKAIKFNTILPQAIRDEAAEK 145


>Z70756-3|CAC42337.1| 2514|Caenorhabditis elegans Hypothetical
           protein T06E4.3b protein.
          Length = 2514

 Score = 27.5 bits (58), Expect = 5.4
 Identities = 13/27 (48%), Positives = 15/27 (55%)
 Frame = -2

Query: 184 VLCTQSTPLYITNHEPVSPFIPYLLIP 104
           V+ T S P    N E V   IP+LLIP
Sbjct: 446 VIVTASCPFANNNDEGVKQIIPFLLIP 472


>Z70756-2|CAA94790.2| 2531|Caenorhabditis elegans Hypothetical
           protein T06E4.3a protein.
          Length = 2531

 Score = 27.5 bits (58), Expect = 5.4
 Identities = 13/27 (48%), Positives = 15/27 (55%)
 Frame = -2

Query: 184 VLCTQSTPLYITNHEPVSPFIPYLLIP 104
           V+ T S P    N E V   IP+LLIP
Sbjct: 446 VIVTASCPFANNNDEGVKQIIPFLLIP 472


>AB018598-1|BAA33886.1| 2514|Caenorhabditis elegans ATM-like protein
           protein.
          Length = 2514

 Score = 27.5 bits (58), Expect = 5.4
 Identities = 13/27 (48%), Positives = 15/27 (55%)
 Frame = -2

Query: 184 VLCTQSTPLYITNHEPVSPFIPYLLIP 104
           V+ T S P    N E V   IP+LLIP
Sbjct: 446 VIVTASCPFANNNDEGVKQIIPFLLIP 472


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,016,905
Number of Sequences: 27780
Number of extensions: 195510
Number of successful extensions: 487
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 479
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 487
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 892829112
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)