Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1133X
         (482 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    25   0.32 
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    25   0.32 
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    24   0.98 
AB086196-1|BAD06465.1|  289|Apis mellifera Period protein.             24   0.98 
AB238796-1|BAE93398.1|  128|Apis mellifera Queen brain-selective...    22   4.0  
DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase ...    21   6.9  
DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase ...    21   6.9  
AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic ac...    21   9.1  

>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 25.4 bits (53), Expect = 0.32
 Identities = 16/60 (26%), Positives = 28/60 (46%), Gaps = 3/60 (5%)
 Frame = -2

Query: 265  FACHYLSDF-NREDVIFPQCINSGPSKKVLCTQSTPLYITNHEPV--SPFIPYLLIPDSG 95
            +  HY +   N +++   +   S   K +LC  +  LY+T+H  +  SP  P L +   G
Sbjct: 1437 YTLHYRTAHGNLDELQLSRHATSHELKGLLCGNTYQLYLTSHNKIGSSPSSPVLSVRTQG 1496


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 25.4 bits (53), Expect = 0.32
 Identities = 16/60 (26%), Positives = 28/60 (46%), Gaps = 3/60 (5%)
 Frame = -2

Query: 265  FACHYLSDF-NREDVIFPQCINSGPSKKVLCTQSTPLYITNHEPV--SPFIPYLLIPDSG 95
            +  HY +   N +++   +   S   K +LC  +  LY+T+H  +  SP  P L +   G
Sbjct: 1433 YTLHYRTAHGNLDELQLSRHATSHELKGLLCGNTYQLYLTSHNKIGSSPSSPVLSVRTQG 1492


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 23.8 bits (49), Expect = 0.98
 Identities = 9/20 (45%), Positives = 14/20 (70%)
 Frame = +3

Query: 333 QRYSKGMAHESYSLEASSGL 392
           Q+Y++  AH+S + EA S L
Sbjct: 241 QKYTRSFAHQSINKEARSNL 260


>AB086196-1|BAD06465.1|  289|Apis mellifera Period protein.
          Length = 289

 Score = 23.8 bits (49), Expect = 0.98
 Identities = 9/20 (45%), Positives = 14/20 (70%)
 Frame = +3

Query: 333 QRYSKGMAHESYSLEASSGL 392
           Q+Y++  AH+S + EA S L
Sbjct: 236 QKYTRSFAHQSINKEARSNL 255


>AB238796-1|BAE93398.1|  128|Apis mellifera Queen brain-selective
           protein-1 protein.
          Length = 128

 Score = 21.8 bits (44), Expect = 4.0
 Identities = 7/19 (36%), Positives = 13/19 (68%)
 Frame = +1

Query: 232 PC*NQRDSDKQINQFEWNA 288
           PC   R+SD+ +N  +W++
Sbjct: 106 PCLPHRNSDRDLNIRKWSS 124


>DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase
           isoform B protein.
          Length = 931

 Score = 21.0 bits (42), Expect = 6.9
 Identities = 9/12 (75%), Positives = 9/12 (75%)
 Frame = +2

Query: 203 VNALRKNDILPV 238
           VN L  NDILPV
Sbjct: 43  VNTLISNDILPV 54


>DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase
           isoform A protein.
          Length = 969

 Score = 21.0 bits (42), Expect = 6.9
 Identities = 9/12 (75%), Positives = 9/12 (75%)
 Frame = +2

Query: 203 VNALRKNDILPV 238
           VN L  NDILPV
Sbjct: 81  VNTLISNDILPV 92


>AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic
           acetylcholine receptorApisa2 subunit protein.
          Length = 541

 Score = 20.6 bits (41), Expect = 9.1
 Identities = 8/14 (57%), Positives = 9/14 (64%)
 Frame = -2

Query: 403 RVCCNPLDASRLYD 362
           R+C    DA RLYD
Sbjct: 13  RICHGNPDAKRLYD 26


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 122,886
Number of Sequences: 438
Number of extensions: 2438
Number of successful extensions: 8
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 13174803
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)