Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1133X
         (482 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g34520.1 68415.m04240 ribosomal protein S14 mitochondrial fam...    49   2e-06
At3g17630.1 68416.m02252 cation/hydrogen exchanger, putative (CH...    29   1.6  
At4g38780.1 68417.m05491 splicing factor, putative strong simila...    29   2.2  
At5g61180.1 68418.m07675 hypothetical protein contains Pfam prof...    28   2.9  
At4g08760.1 68417.m01444 hypothetical protein                          28   2.9  
At5g57050.1 68418.m07121 protein phosphatase 2C ABI2 / PP2C ABI2...    27   6.6  
At1g80070.1 68414.m09373 splicing factor, putative strong simila...    27   8.8  

>At2g34520.1 68415.m04240 ribosomal protein S14 mitochondrial family
           protein identical to ribosomal protein S14 {Arabidopsis
           thaliana} NCBI_gi:4583554
          Length = 164

 Score = 48.8 bits (111), Expect = 2e-06
 Identities = 23/61 (37%), Positives = 38/61 (62%), Gaps = 1/61 (1%)
 Frame = +1

Query: 247 RDSDK-QINQFEWNATPMRINNRCVITSRPRGIVKEWRMSRIVWRHLADYNKLSGVQRAM 423
           RD ++ ++++   N+   RI NRCV T R R + + +R+SRIV+R LA    L G+ ++ 
Sbjct: 104 RDKNRYKLSKLPRNSAFARIRNRCVFTGRSRSVTELFRVSRIVFRGLASKGALMGITKSS 163

Query: 424 W 426
           W
Sbjct: 164 W 164


>At3g17630.1 68416.m02252 cation/hydrogen exchanger, putative
           (CHX19) similar to putative Na+/H+-exchanging protein
           GB:CAA23036 from [Arabidopsis thaliana]; monovalent
           cation:proton antiporter family 2 (CPA2) member,
           PMID:11500563
          Length = 857

 Score = 29.1 bits (62), Expect = 1.6
 Identities = 12/28 (42%), Positives = 19/28 (67%)
 Frame = -2

Query: 214 QCINSGPSKKVLCTQSTPLYITNHEPVS 131
           QC N G +K VL  ++   ++TNH+P+S
Sbjct: 29  QC-NEGAAKAVLKGEAVSRFLTNHQPIS 55


>At4g38780.1 68417.m05491 splicing factor, putative strong
           similarity to splicing factor Prp8 [Homo sapiens]
           GI:3661610; contains Pfam profile PF01398:
           Mov34/MPN/PAD-1 family
          Length = 2332

 Score = 28.7 bits (61), Expect = 2.2
 Identities = 15/39 (38%), Positives = 18/39 (46%), Gaps = 2/39 (5%)
 Frame = -2

Query: 226 VIFPQCINSGPSKKVLCTQSTP--LYITNHEPVSPFIPY 116
           V FP   N+ P K  LC   TP  +YI   +P  P   Y
Sbjct: 308 VAFPHLYNNRPRKVKLCVYHTPMVMYIKTEDPDLPAFYY 346


>At5g61180.1 68418.m07675 hypothetical protein contains Pfam profile
           PF04396: Protein of unknown function, DUF537
          Length = 346

 Score = 28.3 bits (60), Expect = 2.9
 Identities = 13/43 (30%), Positives = 23/43 (53%)
 Frame = +2

Query: 161 RRRLSAENFLGRTRVNALRKNDILPVEIREIVTSKSISLNGMP 289
           R  LS  NF G   + A    + +P  +++ ++S  +SLN +P
Sbjct: 107 RSVLSKSNFCGPLTIYAYGDTNQIPSSVQQALSSTGVSLNHVP 149


>At4g08760.1 68417.m01444 hypothetical protein
          Length = 521

 Score = 28.3 bits (60), Expect = 2.9
 Identities = 17/38 (44%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
 Frame = -3

Query: 270 IDLLVTISLISTGRMSFFRNALTLVLPRK-FSALNLRR 160
           +DLLV++ + S G      +AL LVLPR  FS   +RR
Sbjct: 316 VDLLVSVKIASMGDPWVCSDALILVLPRTLFSIHPIRR 353


>At5g57050.1 68418.m07121 protein phosphatase 2C ABI2 / PP2C ABI2 /
           abscisic acid-insensitive 2 (ABI2) identical to
           SP|O04719 Protein phosphatase 2C ABI2 (EC 3.1.3.16)
           (PP2C) (Abscisic acid- insensitive 2) {Arabidopsis
           thaliana}
          Length = 423

 Score = 27.1 bits (57), Expect = 6.6
 Identities = 15/34 (44%), Positives = 21/34 (61%), Gaps = 4/34 (11%)
 Frame = -2

Query: 226 VIFPQCI---NSGPSKKVLCTQSTPLYIT-NHEP 137
           V+FP  I   N G S+ VLC   TPL ++ +H+P
Sbjct: 238 VVFPTHIFVANCGDSRAVLCRGKTPLALSVDHKP 271


>At1g80070.1 68414.m09373 splicing factor, putative strong
           similarity to splicing factor Prp8 [Homo sapiens]
           GI:3661610; contains Pfam profile PF01398:
           Mov34/MPN/PAD-1 family
          Length = 2382

 Score = 26.6 bits (56), Expect = 8.8
 Identities = 13/39 (33%), Positives = 18/39 (46%), Gaps = 2/39 (5%)
 Frame = -2

Query: 226 VIFPQCINSGPSKKVLCTQSTP--LYITNHEPVSPFIPY 116
           + FP   N+ P K  LC   +P  +YI   +P  P   Y
Sbjct: 360 IAFPHLYNNRPRKVKLCVYHSPMIMYIKTEDPDLPAFYY 398


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,375,084
Number of Sequences: 28952
Number of extensions: 179375
Number of successful extensions: 445
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 430
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 445
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 829097472
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)