Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1132
         (607 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ415419-1|CAC94468.1|  441|Tribolium castaneum transcription fa...    22   4.6  
AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like pr...    21   6.1  
AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone recepto...    21   8.1  

>AJ415419-1|CAC94468.1|  441|Tribolium castaneum transcription
           factor protein.
          Length = 441

 Score = 21.8 bits (44), Expect = 4.6
 Identities = 7/13 (53%), Positives = 9/13 (69%)
 Frame = -3

Query: 281 LFNTDFWFRFDCL 243
           L + D W RF+CL
Sbjct: 32  LDDRDLWLRFECL 44


>AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like
           protein protein.
          Length = 1156

 Score = 21.4 bits (43), Expect = 6.1
 Identities = 9/25 (36%), Positives = 16/25 (64%)
 Frame = -1

Query: 115 APRLSSDTTCRGPTSNDQSNGTSPS 41
           +P ++  +T  G T  + +NG+SPS
Sbjct: 703 SPSVTDLSTKDGTTVPESNNGSSPS 727


>AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone receptor
           (isoform A) protein.
          Length = 549

 Score = 21.0 bits (42), Expect = 8.1
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = -1

Query: 106 LSSDTTCRGPTSNDQSNGTSPS 41
           L+S ++  G T+N  SNG S S
Sbjct: 64  LASGSSLNGLTNNVPSNGLSSS 85


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 140,222
Number of Sequences: 336
Number of extensions: 3170
Number of successful extensions: 15
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 15352827
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)