Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1132
         (607 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC26F1.03 |pda1||pyruvate dehydrogenase e1 component alpha sub...    88   1e-18
SPBC4.03c |||COPII-coated vesicle component Sfb3 |Schizosaccharo...    27   1.6  
SPAC7D4.14c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    27   1.6  
SPCC1259.13 |chk1|rad27|Chk1 protein kinase|Schizosaccharomyces ...    27   2.8  
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1...    27   2.8  
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    26   3.7  
SPAC24B11.12c |||P-type ATPase |Schizosaccharomyces pombe|chr 1|...    26   4.9  
SPAC3G6.04 |rnp24||RNA-binding protein Rnp24|Schizosaccharomyces...    26   4.9  
SPBC1289.05c |vma10||V-type ATPase subunit G|Schizosaccharomyces...    26   4.9  
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    22   5.7  
SPBC1604.02c |||PPR repeat protein|Schizosaccharomyces pombe|chr...    25   6.5  
SPCC962.03c |cut15||karyopherin Cut15|Schizosaccharomyces pombe|...    25   6.5  
SPAC22F8.09 |rrp16|nop53|rRNA processing protein Rrp16 |Schizosa...    25   6.5  
SPBC2D10.04 |||arrestin Aly1 related|Schizosaccharomyces pombe|c...    25   8.6  
SPBC1289.10c |||transcription factor |Schizosaccharomyces pombe|...    25   8.6  
SPAC15A10.10 |mde6||Muskelin homolog|Schizosaccharomyces pombe|c...    25   8.6  

>SPAC26F1.03 |pda1||pyruvate dehydrogenase e1 component alpha
           subunit Pda1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 409

 Score = 87.8 bits (208), Expect = 1e-18
 Identities = 39/81 (48%), Positives = 55/81 (67%)
 Frame = +1

Query: 4   EYCNAGKGPLVMEMETYRYSGHSMSDPGTSYRTRDEVQEVRQTRDPITSFKEKILNHELV 183
           +Y      PL+ME  TYRY GHSMSDPGT+YR+R+EVQ+VR  RDPI   K+ I+   + 
Sbjct: 288 KYTVENSQPLLMEFVTYRYGGHSMSDPGTTYRSREEVQKVRAARDPIEGLKKHIMEWGVA 347

Query: 184 TPDQLKDIDAKVRKEVDEATK 246
             ++LK+I+ ++R  VDE  +
Sbjct: 348 NANELKNIEKRIRGMVDEEVR 368


>SPBC4.03c |||COPII-coated vesicle component Sfb3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 891

 Score = 27.5 bits (58), Expect = 1.6
 Identities = 16/46 (34%), Positives = 23/46 (50%), Gaps = 5/46 (10%)
 Frame = -3

Query: 569 TIVMFTLPKSK-----VTYCVAVTKKIISTKGIAI*MPQLKKITKV 447
           T V++T P  +     V YC AVT K   T  +AI  P +  + K+
Sbjct: 592 TAVLYTTPSGERRVRVVNYCCAVTSKSYDTISLAIVEPIVAVLAKI 637


>SPAC7D4.14c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 551

 Score = 27.5 bits (58), Expect = 1.6
 Identities = 17/49 (34%), Positives = 26/49 (53%), Gaps = 3/49 (6%)
 Frame = +1

Query: 232 DEATKQSKRNQKSVLKSXXPIYTTRTWNPSSVA---STRLPRSNTLRSN 369
           +E++K  K N K + KS   +Y  + +NPSSV    S+  P+ N    N
Sbjct: 156 EESSKPEKSN-KLLAKSTLSLYGNQAFNPSSVLPSNSSSTPKENKKNVN 203


>SPCC1259.13 |chk1|rad27|Chk1 protein kinase|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 496

 Score = 26.6 bits (56), Expect = 2.8
 Identities = 12/40 (30%), Positives = 22/40 (55%)
 Frame = +3

Query: 258 EPEVGIEEXSXDIYYKNLEPFVRGIHPAAPLKHLEVQPRN 377
           EP+VGI+E     Y+  L   +  +H +  + H +++P N
Sbjct: 104 EPDVGIDEDVAQFYFAQLMEGISFMH-SKGVAHRDLKPEN 142


>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 800

 Score = 26.6 bits (56), Expect = 2.8
 Identities = 14/36 (38%), Positives = 19/36 (52%)
 Frame = -1

Query: 112 PRLSSDTTCRGPTSNDQSNGTSPSPSPKDLSLRCST 5
           P  +S T+   P ++  S GTS SP P   S  C+T
Sbjct: 307 PTSTSSTSTPPPPASTSSTGTSSSPLP-STSTSCTT 341


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 13/33 (39%), Positives = 16/33 (48%)
 Frame = -1

Query: 130 SASPPAPRLSSDTTCRGPTSNDQSNGTSPSPSP 32
           SA PP P  S+ +T R P     S   S  P+P
Sbjct: 359 SAPPPPPPRSAPSTGRQPPPLSSSRAVSNPPAP 391


>SPAC24B11.12c |||P-type ATPase |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1402

 Score = 25.8 bits (54), Expect = 4.9
 Identities = 13/35 (37%), Positives = 19/35 (54%)
 Frame = +3

Query: 27   SFGDGDGDVPLLWSFDVGPRHVVSDERRGAGGEAD 131
            + GDG  DV ++   D+G   +V +E R A   AD
Sbjct: 1009 AIGDGANDVAMIQKADIGV-GIVGEEGRAAAMSAD 1042


>SPAC3G6.04 |rnp24||RNA-binding protein Rnp24|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 369

 Score = 25.8 bits (54), Expect = 4.9
 Identities = 14/39 (35%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
 Frame = +1

Query: 193 QLKDIDAKV-RKEVDEATKQSKRNQKSVLKSXXPIYTTR 306
           +LK +DAK  RKE  E+ ++SKR+   +       +TT+
Sbjct: 80  RLKRLDAKYGRKEEGESQEESKRSPWGIWVGNLSFHTTK 118


>SPBC1289.05c |vma10||V-type ATPase subunit G|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 108

 Score = 25.8 bits (54), Expect = 4.9
 Identities = 16/61 (26%), Positives = 31/61 (50%), Gaps = 1/61 (1%)
 Frame = +1

Query: 91  SYRTRDEVQEVRQTRDPITSFKEKILNHELVTPDQLKDIDAKVRKEVDE-ATKQSKRNQK 267
           S +T   +Q++ +      +  EK   H      +LKD   + ++E+DE A+K+ +  +K
Sbjct: 2   SAQTNSGIQQLLEAEKVARNIVEKARQHRT---QRLKDARLEAKREIDEYASKKEEEFKK 58

Query: 268 S 270
           S
Sbjct: 59  S 59


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with
           EF hand and WH2 motif |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1794

 Score = 21.8 bits (44), Expect(2) = 5.7
 Identities = 10/30 (33%), Positives = 15/30 (50%)
 Frame = +2

Query: 302 QELGTLRPWHPPGCPAQTP*GPTSQPLKPQ 391
           Q+ G + P  P G     P GP +  ++PQ
Sbjct: 215 QQTGVVMPPQPTGYLQAQPTGPFASFVQPQ 244



 Score = 21.8 bits (44), Expect(2) = 5.7
 Identities = 8/18 (44%), Positives = 13/18 (72%)
 Frame = +2

Query: 365 PTSQPLKPQYRLFLHHTQ 418
           P +QPLKPQ    +H+++
Sbjct: 251 PAAQPLKPQKTGQIHNSK 268


>SPBC1604.02c |||PPR repeat protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 697

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 14/46 (30%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
 Frame = -2

Query: 531 ILC-CRYKKNNFYQRYCHINATVKKNNKSVNFFLTL*LYCV*CKNN 397
           ++C C Y+ N+F     H N  ++ NN S+   L   LY +  + N
Sbjct: 593 LICWCYYRLNDFKSLIQHTNNLLQSNNASLLRRLAATLYRIQIREN 638


>SPCC962.03c |cut15||karyopherin Cut15|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 542

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 19/62 (30%), Positives = 27/62 (43%), Gaps = 5/62 (8%)
 Frame = +1

Query: 109 EVQEVRQTRDPITSFKEKILNHELVTPDQLK-----DIDAKVRKEVDEATKQSKRNQKSV 273
           +VQE  +   P+   KE  L  EL  PD LK     DI+A+++         SK     +
Sbjct: 55  DVQEPAEETIPLEQDKENDLELELQLPDLLKALYSDDIEAQIQATAKFRKALSKETNPPI 114

Query: 274 LK 279
            K
Sbjct: 115 QK 116


>SPAC22F8.09 |rrp16|nop53|rRNA processing protein Rrp16
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 419

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 17/55 (30%), Positives = 31/55 (56%), Gaps = 1/55 (1%)
 Frame = +1

Query: 97  RTRDEVQEVRQTRDPITSFKEKILNHELV-TPDQLKDIDAKVRKEVDEATKQSKR 258
           +TR +  ++RQ R+      E+  N EL+ T D+   I  K++++ D+A K S +
Sbjct: 273 KTRSQRNKIRQRREEELRLLEQKKNEELLRTIDKAPAISKKLQQK-DKAEKFSNK 326


>SPBC2D10.04 |||arrestin Aly1 related|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 658

 Score = 25.0 bits (52), Expect = 8.6
 Identities = 19/65 (29%), Positives = 33/65 (50%), Gaps = 3/65 (4%)
 Frame = +1

Query: 157 EKILNHELVTPDQLKD-IDAKVR--KEVDEATKQSKRNQKSVLKSXXPIYTTRTWNPSSV 327
           E   N +L  P+   + ++AK+   +   EAT +     KS L    P+   RT +P+S+
Sbjct: 274 EYTYNFDLAIPNCFPESVEAKMGWVRYFLEATVERFGTFKSNLNGRTPVQLVRTPSPASL 333

Query: 328 ASTRL 342
           +S+ L
Sbjct: 334 SSSEL 338


>SPBC1289.10c |||transcription factor |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 743

 Score = 25.0 bits (52), Expect = 8.6
 Identities = 10/32 (31%), Positives = 15/32 (46%)
 Frame = -1

Query: 127 ASPPAPRLSSDTTCRGPTSNDQSNGTSPSPSP 32
           +S P P  SS    R       +N  +P+P+P
Sbjct: 593 SSRPTPNASSPLDVRSKQKPSSANSNAPTPAP 624


>SPAC15A10.10 |mde6||Muskelin homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 716

 Score = 25.0 bits (52), Expect = 8.6
 Identities = 8/18 (44%), Positives = 15/18 (83%)
 Frame = -2

Query: 90  RAGVRHRMTRVTVRLHLH 37
           R G++H ++ V+++LHLH
Sbjct: 614 RWGIKHCLSNVSLQLHLH 631


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,389,217
Number of Sequences: 5004
Number of extensions: 48320
Number of successful extensions: 166
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 162
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 166
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 266270664
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)