BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= br--1132 (607 letters) Database: rice 37,544 sequences; 14,793,348 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value 02_05_0689 - 30937621-30937665,30938143-30938208,30938303-309383... 105 2e-23 06_01_0981 + 7613381-7614086,7614203-7614282,7614883-7614960,761... 100 8e-22 04_01_0110 + 1123238-1123450,1124211-1124997,1126126-1126403 66 2e-11 12_01_0535 + 4208410-4208661,4209529-4209627,4210125-4210265,421... 52 5e-07 09_04_0744 - 19867604-19867686,19868075-19869872,19870777-198708... 30 1.2 03_02_1023 + 13265179-13265330,13265526-13265637,13265752-132660... 30 1.6 06_02_0155 + 12380452-12381012 29 2.2 06_03_1259 - 28800954-28802468 29 2.9 03_06_0296 + 32901696-32901892,32901989-32902232,32903992-329041... 29 2.9 04_03_0367 + 14970511-14970697,14970862-14970869 29 3.8 11_06_0718 - 26592786-26593856,26597401-26597451,26597977-265984... 28 5.0 08_02_0274 - 15192670-15192983,15193110-15193200,15193295-151936... 28 5.0 07_03_1649 - 28385289-28385358,28387039-28387877 28 5.0 03_02_0797 - 11296426-11297258,11297745-11297901 28 5.0 06_02_0200 - 12946139-12946282,12947636-12947842,12949506-129496... 28 6.6 06_03_0635 - 22971502-22973840,22974112-22974403,22974639-229751... 27 8.7 03_05_0815 + 27917516-27917767,27918024-27918110,27918281-279183... 27 8.7 01_06_0239 - 27791301-27791717,27793526-27793585,27793774-27793959 27 8.7 >02_05_0689 - 30937621-30937665,30938143-30938208,30938303-30938356, 30938489-30938560,30938648-30938743,30939883-30939960, 30940485-30940564,30940662-30941343 Length = 390 Score = 105 bits (253), Expect = 2e-23 Identities = 45/79 (56%), Positives = 63/79 (79%) Frame = +1 Query: 25 GPLVMEMETYRYSGHSMSDPGTSYRTRDEVQEVRQTRDPITSFKEKILNHELVTPDQLKD 204 GP+V+EM+TYRY GHSMSDPG++YRTRDE+ VRQ RDPI ++ IL H+L T +LKD Sbjct: 278 GPIVLEMDTYRYHGHSMSDPGSTYRTRDEISGVRQERDPIERVRKLILAHDLATAAELKD 337 Query: 205 IDAKVRKEVDEATKQSKRN 261 ++ ++RKEVD+A ++K + Sbjct: 338 MEKEIRKEVDDAIAKAKES 356 >06_01_0981 + 7613381-7614086,7614203-7614282,7614883-7614960, 7615166-7615261,7615370-7615441,7615676-7615729, 7615819-7615884,7616291-7616335 Length = 398 Score = 100 bits (240), Expect = 8e-22 Identities = 40/79 (50%), Positives = 61/79 (77%) Frame = +1 Query: 25 GPLVMEMETYRYSGHSMSDPGTSYRTRDEVQEVRQTRDPITSFKEKILNHELVTPDQLKD 204 GP+++EM+TYRY GHSMSDPG++YRTRDE+ +RQ RDPI ++ +L H+ T +LKD Sbjct: 286 GPIILEMDTYRYHGHSMSDPGSTYRTRDEIAGIRQERDPIERVRKLLLAHDFATTQELKD 345 Query: 205 IDAKVRKEVDEATKQSKRN 261 ++ ++RK+VD A ++K + Sbjct: 346 MEKEIRKQVDTAIAKAKES 364 >04_01_0110 + 1123238-1123450,1124211-1124997,1126126-1126403 Length = 425 Score = 66.5 bits (155), Expect = 2e-11 Identities = 34/82 (41%), Positives = 48/82 (58%) Frame = +1 Query: 1 IEYCNAGKGPLVMEMETYRYSGHSMSDPGTSYRTRDEVQEVRQTRDPITSFKEKILNHEL 180 IE G+GP ++E ETYR+ GHS++DP R DE RDPIT+ K+ I+ L Sbjct: 300 IERARRGEGPTLVECETYRFRGHSLADP-DELRRPDEKSHY-AARDPITALKKYIIEQNL 357 Query: 181 VTPDQLKDIDAKVRKEVDEATK 246 T +LK I+ K+ V+EA + Sbjct: 358 ATESELKSIEKKIDDVVEEAVE 379 >12_01_0535 + 4208410-4208661,4209529-4209627,4210125-4210265, 4210378-4210560,4210664-4210821,4210905-4211004, 4211085-4211196,4211241-4211419,4211489-4211674, 4211762-4211929 Length = 525 Score = 51.6 bits (118), Expect = 5e-07 Identities = 26/83 (31%), Positives = 46/83 (55%) Frame = +1 Query: 28 PLVMEMETYRYSGHSMSDPGTSYRTRDEVQEVRQTRDPITSFKEKILNHELVTPDQLKDI 207 P+++E TYR HS SD T YR DE++ R RDPI+ +++ + + + ++ Sbjct: 404 PILVEALTYRVGHHSTSDDSTKYRPVDEIEHWRTARDPISRYRKWVQGNGWWCDEDESEL 463 Query: 208 DAKVRKEVDEATKQSKRNQKSVL 276 VR+E+ +A + ++R K L Sbjct: 464 RNNVRQELLKAIQVAERMPKPPL 486 >09_04_0744 - 19867604-19867686,19868075-19869872,19870777-19870801, 19872313-19872710 Length = 767 Score = 30.3 bits (65), Expect = 1.2 Identities = 11/34 (32%), Positives = 21/34 (61%) Frame = -2 Query: 159 LLERSDGVSGLPHLLHLVSRPIRRAGVRHRMTRV 58 LL+ DG+SG+PHL +L +++ G + + + Sbjct: 691 LLDSKDGLSGVPHLTNLNELLVKKCGEKENLMEI 724 >03_02_1023 + 13265179-13265330,13265526-13265637,13265752-13266048, 13266361-13266623,13267637-13267847,13268420-13268590, 13268671-13268748,13269275-13269520,13269763-13271868, 13272122-13273904,13274113-13274216,13274752-13275108, 13275210-13275328,13276175-13276436,13276669-13276893, 13277075-13277214,13278087-13278159,13278431-13278532, 13278647-13279018,13279183-13279230,13279516-13279900, 13280440-13280558 Length = 2574 Score = 29.9 bits (64), Expect = 1.6 Identities = 19/58 (32%), Positives = 28/58 (48%), Gaps = 1/58 (1%) Frame = +1 Query: 112 VQEVRQ-TRDPITSFKEKILNHELVTPDQLKDIDAKVRKEVDEATKQSKRNQKSVLKS 282 V E+R R P+T ILNH + Q+ D+D +R+ A K+ +KS S Sbjct: 96 VGEIRLGLRRPLTQLGFTILNHGPILQLQISDLDIVLRQPAKSAKKKKPPPRKSTSTS 153 >06_02_0155 + 12380452-12381012 Length = 186 Score = 29.5 bits (63), Expect = 2.2 Identities = 13/26 (50%), Positives = 15/26 (57%) Frame = -1 Query: 139 GLWSASPPAPRLSSDTTCRGPTSNDQ 62 G A+PPAP S DT R PT D+ Sbjct: 50 GNGGAAPPAPATSPDTEVRAPTYGDK 75 >06_03_1259 - 28800954-28802468 Length = 504 Score = 29.1 bits (62), Expect = 2.9 Identities = 19/54 (35%), Positives = 28/54 (51%) Frame = -2 Query: 162 LLLERSDGVSGLPHLLHLVSRPIRRAGVRHRMTRVTVRLHLHHQRTFPCVAVLD 1 +L++ +DG SG + L+ S+ G R T TVRLH HQ P ++ D Sbjct: 54 ILIDEADGASGGANDLYDASQLY--LGARCLATAPTVRLHKPHQAPRPVASLPD 105 >03_06_0296 + 32901696-32901892,32901989-32902232,32903992-32904112, 32904219-32904406 Length = 249 Score = 29.1 bits (62), Expect = 2.9 Identities = 12/23 (52%), Positives = 13/23 (56%) Frame = +3 Query: 36 DGDGDVPLLWSFDVGPRHVVSDE 104 D DG VP W D R VVSD+ Sbjct: 148 DADGSVPFYWGVDPDSRLVVSDD 170 >04_03_0367 + 14970511-14970697,14970862-14970869 Length = 64 Score = 28.7 bits (61), Expect = 3.8 Identities = 13/30 (43%), Positives = 17/30 (56%) Frame = +3 Query: 48 DVPLLWSFDVGPRHVVSDERRGAGGEADQR 137 D+PL W V P E RGAGG+ ++R Sbjct: 11 DLPLAWPGRVDPPLAGLGEGRGAGGDEEER 40 >11_06_0718 - 26592786-26593856,26597401-26597451,26597977-26598423, 26599748-26599815,26599965-26600052 Length = 574 Score = 28.3 bits (60), Expect = 5.0 Identities = 24/90 (26%), Positives = 40/90 (44%) Frame = +1 Query: 97 RTRDEVQEVRQTRDPITSFKEKILNHELVTPDQLKDIDAKVRKEVDEATKQSKRNQKSVL 276 R D+ + V+ T+ + + + E+ D D+D R+ +DE Q K V Sbjct: 465 RREDDHKGVKNTKVAVQLLQRNM--DEIRRSDAWTDLDVGTRRRIDE---QVKEIADHVE 519 Query: 277 KSXXPIYTTRTWNPSSVASTRLPRSNTLRS 366 K P Y +W V+S + R+NT+ S Sbjct: 520 KGEGPAY-VNSW----VSSQEMQRANTMGS 544 >08_02_0274 - 15192670-15192983,15193110-15193200,15193295-15193603, 15193859-15193944,15196034-15196088,15196689-15196757, 15197027-15197074,15198090-15198203,15198464-15198526, 15199236-15199427,15199519-15199643,15199723-15199779, 15200209-15200332,15200478-15200543,15200656-15200738, 15200916-15201036,15201663-15201773,15201841-15201936, 15202032-15202107,15202878-15203016,15203283-15203346, 15203454-15203527,15203845-15203923,15204473-15204547 Length = 876 Score = 28.3 bits (60), Expect = 5.0 Identities = 14/43 (32%), Positives = 25/43 (58%), Gaps = 1/43 (2%) Frame = +1 Query: 97 RTRDEVQEVRQTRDPITSFKEKILN-HELVTPDQLKDIDAKVR 222 RTRDE+ +V++ +D +T +K+ + E PD +I V+ Sbjct: 546 RTRDELMDVQRIKDAMTQIYQKLQDIKESAQPDVRHEISQLVK 588 >07_03_1649 - 28385289-28385358,28387039-28387877 Length = 302 Score = 28.3 bits (60), Expect = 5.0 Identities = 15/29 (51%), Positives = 20/29 (68%), Gaps = 2/29 (6%) Frame = -2 Query: 120 LLHLVSRPIRRAGVRHRMT-RVT-VRLHL 40 ++HLVS P+ A V HR T R++ V LHL Sbjct: 43 VVHLVSTPVNLAAVAHRRTDRISLVELHL 71 >03_02_0797 - 11296426-11297258,11297745-11297901 Length = 329 Score = 28.3 bits (60), Expect = 5.0 Identities = 16/39 (41%), Positives = 17/39 (43%), Gaps = 1/39 (2%) Frame = -1 Query: 139 GLWSASPPAPRLSSDTTCRGPTSNDQSNGTSPS-PSPKD 26 G S PAP LSS T S D G PS P+ D Sbjct: 206 GAQSGGTPAPELSSTTAGSSSLSTDSGAGAQPSWPTQAD 244 >06_02_0200 - 12946139-12946282,12947636-12947842,12949506-12949629, 12950167-12950369,12950922-12951620,12951723-12951784, 12952395-12952404,12954905-12957631 Length = 1391 Score = 27.9 bits (59), Expect = 6.6 Identities = 16/51 (31%), Positives = 24/51 (47%), Gaps = 8/51 (15%) Frame = -1 Query: 136 LWSASPPAPRLSSDTTCRGPTSNDQSNGT--------SPSPSPKDLSLRCS 8 LWS SPP+ +++ ++GT PSPSP+ SL C+ Sbjct: 9 LWSPSPPSHHITAAAATPAALFTGAADGTILHWPLLPPPSPSPRPSSLLCA 59 >06_03_0635 - 22971502-22973840,22974112-22974403,22974639-22975162, 22975314-22975583,22976393-22977124,22977226-22977310 Length = 1413 Score = 27.5 bits (58), Expect = 8.7 Identities = 16/47 (34%), Positives = 20/47 (42%) Frame = +3 Query: 78 GPRHVVSDERRGAGGEADQRPHHFVQGEDLESRARHARSAQGYRRQG 218 G V R G GG+ RP + + RA AR +RRQG Sbjct: 75 GAEPAVRRVRGGVGGQQGARPQRRRRQDGAAVRAGDARQRPWHRRQG 121 >03_05_0815 + 27917516-27917767,27918024-27918110,27918281-27918394, 27919644-27919835,27919925-27921677,27921771-27922708, 27923587-27923859 Length = 1202 Score = 27.5 bits (58), Expect = 8.7 Identities = 17/38 (44%), Positives = 21/38 (55%), Gaps = 1/38 (2%) Frame = +1 Query: 40 EMETYRYSGHS-MSDPGTSYRTRDEVQEVRQTRDPITS 150 E ET + S HS + DP T Y R+E+ V Q D TS Sbjct: 452 ERETQQLSEHSQIEDPDTFYH-REELSLVEQKEDHTTS 488 >01_06_0239 - 27791301-27791717,27793526-27793585,27793774-27793959 Length = 220 Score = 27.5 bits (58), Expect = 8.7 Identities = 18/71 (25%), Positives = 34/71 (47%) Frame = +1 Query: 64 GHSMSDPGTSYRTRDEVQEVRQTRDPITSFKEKILNHELVTPDQLKDIDAKVRKEVDEAT 243 G + + PGT ++++Q++ T + + E TPDQ KD DA +++ D+ Sbjct: 79 GMAKASPGT---VKEKIQKLGLT--DVNEGNVVPIEPEKFTPDQKKDFDAMMQQARDQFL 133 Query: 244 KQSKRNQKSVL 276 + +K L Sbjct: 134 NSFMQTRKGTL 144 Database: rice Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 14,793,348 Number of sequences in database: 37,544 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 15,559,599 Number of Sequences: 37544 Number of extensions: 323017 Number of successful extensions: 1441 Number of sequences better than 10.0: 18 Number of HSP's better than 10.0 without gapping: 1359 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1439 length of database: 14,793,348 effective HSP length: 79 effective length of database: 11,827,372 effective search space used: 1442939384 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
- SilkBase 1999-2023 -