Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--1132
(607 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_15625| Best HMM Match : E1_dh (HMM E-Value=0) 115 3e-26
SB_4364| Best HMM Match : E1_dh (HMM E-Value=3.1e-13) 40 0.002
SB_15785| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.41
SB_40280| Best HMM Match : C2 (HMM E-Value=1.8e-05) 31 0.55
SB_53466| Best HMM Match : SCP (HMM E-Value=2.4e-27) 31 0.72
SB_54195| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.96
SB_6656| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.96
SB_44120| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.3
SB_49531| Best HMM Match : C2 (HMM E-Value=2.9e-13) 29 2.2
SB_52732| Best HMM Match : M (HMM E-Value=0.019) 28 5.1
SB_52728| Best HMM Match : Herpes_UL3 (HMM E-Value=1.7) 28 6.7
SB_31403| Best HMM Match : PAN (HMM E-Value=2.7e-18) 28 6.7
SB_51093| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.9
SB_29252| Best HMM Match : Cytadhesin_P30 (HMM E-Value=1.4) 27 8.9
SB_26060| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.9
SB_51340| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.9
SB_35619| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.9
>SB_15625| Best HMM Match : E1_dh (HMM E-Value=0)
Length = 352
Score = 115 bits (277), Expect = 3e-26
Identities = 48/92 (52%), Positives = 71/92 (77%)
Frame = +1
Query: 1 IEYCNAGKGPLVMEMETYRYSGHSMSDPGTSYRTRDEVQEVRQTRDPITSFKEKILNHEL 180
++Y +GKGP++ME++TYRY GHSMSDPGTSYR+RDE+Q VR+TRDPIT +EK+L+ L
Sbjct: 231 VDYARSGKGPILMELKTYRYYGHSMSDPGTSYRSRDEIQSVRKTRDPITGLREKLLDSGL 290
Query: 181 VTPDQLKDIDAKVRKEVDEATKQSKRNQKSVL 276
+ D +K I+ + + E+DEA + +K + + L
Sbjct: 291 ASTDDIKKIEQEAKAEIDEAVECAKNDPEPPL 322
>SB_4364| Best HMM Match : E1_dh (HMM E-Value=3.1e-13)
Length = 238
Score = 39.5 bits (88), Expect = 0.002
Identities = 34/102 (33%), Positives = 46/102 (45%), Gaps = 4/102 (3%)
Frame = +1
Query: 4 EYCNAGKGPLVMEMETYRYSGHSMSDPGTSYRTRDEVQEVRQTRDPI---TSFKEKILNH 174
+Y K P +E TYR HS SD YR+ DE + ++ DPI TSF K
Sbjct: 106 KYIVEQKKPYFLEFMTYRLGDHSTSDNSALYRSEDERKFWKEKNDPIKRLTSFLTKAGVK 165
Query: 175 ELVTPDQLKDIDAKVRKEVDEAT-KQSKRNQKSVLKSXXPIY 297
++ P++ + A RK V E K K SVL +Y
Sbjct: 166 DM--PNEESE-RATTRKAVTETLHKCYKHKFPSVLSLFDDVY 204
>SB_15785| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 600
Score = 31.9 bits (69), Expect = 0.41
Identities = 32/112 (28%), Positives = 50/112 (44%), Gaps = 5/112 (4%)
Frame = +1
Query: 34 VMEMETYRYSGHSMSDPGTSYRTRDEVQEVRQTRDPITSFKEKILNHELVTPDQLKDIDA 213
V ++E+ R S S + R VQE+ QT D +KI + +Q+ +
Sbjct: 417 VRDLES-RLSQRSNTSASEVSSLRARVQELEQTLDDADEHIKKIETELDGSKEQMMFLQE 475
Query: 214 KVRKEVDEATKQSK-----RNQKSVLKSXXPIYTTRTWNPSSVASTRLPRSN 354
VR+E +E + ++ R Q LK +RT SS++S L RSN
Sbjct: 476 TVRRECEERLELTEALSEARTQLLSLKRNPSTSLSRTSLNSSLSSGSLTRSN 527
>SB_40280| Best HMM Match : C2 (HMM E-Value=1.8e-05)
Length = 485
Score = 31.5 bits (68), Expect = 0.55
Identities = 20/62 (32%), Positives = 26/62 (41%)
Frame = +1
Query: 4 EYCNAGKGPLVMEMETYRYSGHSMSDPGTSYRTRDEVQEVRQTRDPITSFKEKILNHELV 183
E+ + P ++ T S SD G SYR + V RD I K NH+LV
Sbjct: 265 EFLTPKETPNHSDVNTPVQSSPDHSDEGDSYRDARDATPVPMDRDSIDGSPLKYGNHDLV 324
Query: 184 TP 189
P
Sbjct: 325 PP 326
>SB_53466| Best HMM Match : SCP (HMM E-Value=2.4e-27)
Length = 5087
Score = 31.1 bits (67), Expect = 0.72
Identities = 18/67 (26%), Positives = 33/67 (49%)
Frame = +1
Query: 160 KILNHELVTPDQLKDIDAKVRKEVDEATKQSKRNQKSVLKSXXPIYTTRTWNPSSVASTR 339
+++NHE + KD+D ++ E E TK +++ S + T T ++V +TR
Sbjct: 2402 EVVNHEEDITEDRKDVDGALQLEEREPTKGEVSEKRTETYSSDDGFRTTTITTTTVKTTR 2461
Query: 340 LPRSNTL 360
S T+
Sbjct: 2462 RIISTTM 2468
>SB_54195| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 370
Score = 30.7 bits (66), Expect = 0.96
Identities = 13/28 (46%), Positives = 18/28 (64%)
Frame = -2
Query: 270 RLLVPFRLFSGLVYFFTYLGVDILELIW 187
RL++ F LF+GLVYF + + EL W
Sbjct: 19 RLVILFALFTGLVYFSLLNTITVKELTW 46
>SB_6656| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 461
Score = 30.7 bits (66), Expect = 0.96
Identities = 16/49 (32%), Positives = 30/49 (61%)
Frame = +1
Query: 121 VRQTRDPITSFKEKILNHELVTPDQLKDIDAKVRKEVDEATKQSKRNQK 267
V Q RD +F++K + EL+ + +++ ++RK+VDE +Q +N K
Sbjct: 58 VWQFRDETGNFEQKH-DAELIKEAKRIEVEEEIRKQVDELMRQELKNLK 105
>SB_44120| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 104
Score = 30.3 bits (65), Expect = 1.3
Identities = 21/65 (32%), Positives = 32/65 (49%)
Frame = -2
Query: 219 YLGVDILELIWRDELVIQDLLLERSDGVSGLPHLLHLVSRPIRRAGVRHRMTRVTVRLHL 40
Y+G DILEL W + D ++ +DG + +P LLH + P R V + R+ L
Sbjct: 11 YVGRDILEL-W-----LYDAVIHFNDGFASVPELLHHLQIPPGRYTVAGCLKEDAARVSL 64
Query: 39 HHQRT 25
+T
Sbjct: 65 AQYKT 69
>SB_49531| Best HMM Match : C2 (HMM E-Value=2.9e-13)
Length = 752
Score = 29.5 bits (63), Expect = 2.2
Identities = 23/96 (23%), Positives = 34/96 (35%), Gaps = 1/96 (1%)
Frame = +1
Query: 7 YCNAGKGPLVMEMETYRYSGHSMSDPGTSYRTRDEVQEVRQTRDPITSFKEKILNHELVT 186
Y L E+E Y + P DE E T DP+ E + + T
Sbjct: 184 YMETSLDELAFEIEAYEAESRGETKPSDVIDETDEAAERLVTMDPVFETTEVVEEAQEPT 243
Query: 187 PDQLK-DIDAKVRKEVDEATKQSKRNQKSVLKSXXP 291
PD K + ++ DEA ++ + V S P
Sbjct: 244 PDPEKLQKELCSEEKSDEAKLETVNKTEEVNTSEEP 279
>SB_52732| Best HMM Match : M (HMM E-Value=0.019)
Length = 1366
Score = 28.3 bits (60), Expect = 5.1
Identities = 13/39 (33%), Positives = 22/39 (56%)
Frame = -2
Query: 534 NILCCRYKKNNFYQRYCHINATVKKNNKSVNFFLTL*LY 418
N++CCRY N Q +C N + K + + F+T+ L+
Sbjct: 298 NVICCRYNSNYTNQYFC--NYAMLKLHYHHDTFITIILF 334
>SB_52728| Best HMM Match : Herpes_UL3 (HMM E-Value=1.7)
Length = 398
Score = 27.9 bits (59), Expect = 6.7
Identities = 19/83 (22%), Positives = 35/83 (42%)
Frame = +1
Query: 61 SGHSMSDPGTSYRTRDEVQEVRQTRDPITSFKEKILNHELVTPDQLKDIDAKVRKEVDEA 240
S S +P TSYR E + + R +T ++ I EL +L + K E
Sbjct: 2 SRQSGLNPSTSYRMSLETKRLVSDRGNLTCTEKCITTVELEDVRELAATKHRKEKRASEL 61
Query: 241 TKQSKRNQKSVLKSXXPIYTTRT 309
T K + + + + +Y++ +
Sbjct: 62 TDVDKMDMSTTIYNMDRLYSSES 84
>SB_31403| Best HMM Match : PAN (HMM E-Value=2.7e-18)
Length = 1051
Score = 27.9 bits (59), Expect = 6.7
Identities = 23/86 (26%), Positives = 40/86 (46%), Gaps = 5/86 (5%)
Frame = +1
Query: 13 NAGKGPLVMEMETYRYSGHSMSDPGTSYRTRD-----EVQEVRQTRDPITSFKEKILNHE 177
+A K L+ R S H+ P S + R E + R+ + + KEK+ + E
Sbjct: 125 SAAKAALMTSFYADRGSSHA-DKPTRSNQIRQQGSNFETKLSRENEEHLIELKEKLHDAE 183
Query: 178 LVTPDQLKDIDAKVRKEVDEATKQSK 255
QLK I+ +RKE+D+ ++ +
Sbjct: 184 KEIA-QLKTIEPMLRKELDDCLEEKR 208
>SB_51093| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 253
Score = 27.5 bits (58), Expect = 8.9
Identities = 12/30 (40%), Positives = 17/30 (56%)
Frame = -1
Query: 124 SPPAPRLSSDTTCRGPTSNDQSNGTSPSPS 35
S PR S TT P+++ SN T+ +PS
Sbjct: 38 STSTPRTGSTTTTSAPSTSTTSNSTTRAPS 67
Score = 27.5 bits (58), Expect = 8.9
Identities = 12/30 (40%), Positives = 17/30 (56%)
Frame = -1
Query: 124 SPPAPRLSSDTTCRGPTSNDQSNGTSPSPS 35
S PR S TT P+++ SN T+ +PS
Sbjct: 99 STSTPRTGSTTTTSAPSTSTTSNSTTRAPS 128
>SB_29252| Best HMM Match : Cytadhesin_P30 (HMM E-Value=1.4)
Length = 1439
Score = 27.5 bits (58), Expect = 8.9
Identities = 15/51 (29%), Positives = 26/51 (50%)
Frame = +1
Query: 46 ETYRYSGHSMSDPGTSYRTRDEVQEVRQTRDPITSFKEKILNHELVTPDQL 198
E YR G+ S PG+ Y ++TR+P + +E+ + E + P +L
Sbjct: 1327 EYYRQMGYG-SAPGSQYSGEGSGHIEKETREPSPTTQEEPVEVEEIPPSRL 1376
>SB_26060| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2671
Score = 27.5 bits (58), Expect = 8.9
Identities = 23/85 (27%), Positives = 37/85 (43%), Gaps = 2/85 (2%)
Frame = +1
Query: 121 VRQTRDPITSFKE-KILNHELVTPDQLKDIDAKVRKEVDEATKQSKRNQKSVLKSXXPIY 297
+R + +T +E ILN +VTP + + VD+ KQ N+K LK+ P
Sbjct: 988 LRPNLESVTHEEEGTILN--MVTPCNMAQKRTDISMSVDDYDKQHPNNEKGKLKTNEPGN 1045
Query: 298 TTRTWNPSSVASTR-LPRSNTLRSN 369
T P + + + R L+ N
Sbjct: 1046 QNDTKRPKKKTNLKFVLRKFVLKEN 1070
>SB_51340| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 4529
Score = 27.5 bits (58), Expect = 8.9
Identities = 17/44 (38%), Positives = 21/44 (47%), Gaps = 6/44 (13%)
Frame = +3
Query: 336 PAAPLKHLEVQPRNH*NLNIDYF------YIIHSIVTMLKKN*H 449
P +PLK + P N +NIDY+ Y T LKKN H
Sbjct: 1044 PLSPLKKGVLSPLNDEQMNIDYYNDNAVDYTRQLTATTLKKNAH 1087
>SB_35619| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 255
Score = 27.5 bits (58), Expect = 8.9
Identities = 12/28 (42%), Positives = 18/28 (64%)
Frame = +1
Query: 196 LKDIDAKVRKEVDEATKQSKRNQKSVLK 279
L D+DAKV K +D+ K+ R + +LK
Sbjct: 198 LLDLDAKVHKFMDKKMKEKTRQKTQLLK 225
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,977,496
Number of Sequences: 59808
Number of extensions: 372547
Number of successful extensions: 1395
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 1217
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1394
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1475788250
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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