Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--1132
(607 letters)
Database: mosquito
2352 sequences; 563,979 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AJ535203-1|CAD59403.1| 1229|Anopheles gambiae SMC1 protein protein. 27 0.36
U50468-1|AAA93472.1| 91|Anopheles gambiae protein ( Anopheles ... 27 0.47
AB090813-2|BAC57902.1| 1099|Anopheles gambiae reverse transcript... 27 0.62
AJ010903-1|CAA09389.1| 373|Anopheles gambiae ICHIT protein prot... 25 1.9
AY344832-1|AAR05803.1| 333|Anopheles gambiae ICHIT protein. 25 2.5
AY344831-1|AAR05802.1| 333|Anopheles gambiae ICHIT protein. 25 2.5
AY344835-1|AAR05806.1| 334|Anopheles gambiae ICHIT protein. 24 3.3
AY344834-1|AAR05805.1| 334|Anopheles gambiae ICHIT protein. 24 3.3
AY344833-1|AAR05804.1| 334|Anopheles gambiae ICHIT protein. 23 7.7
AB090823-2|BAC57922.1| 1154|Anopheles gambiae reverse transcript... 23 7.7
>AJ535203-1|CAD59403.1| 1229|Anopheles gambiae SMC1 protein protein.
Length = 1229
Score = 27.5 bits (58), Expect = 0.36
Identities = 14/53 (26%), Positives = 29/53 (54%)
Frame = +1
Query: 115 QEVRQTRDPITSFKEKILNHELVTPDQLKDIDAKVRKEVDEATKQSKRNQKSV 273
QE+ + ++ I K++ H+ + DQ+++ AK R+EV K+ +S+
Sbjct: 871 QEIEKDKEKIELMKQEKAAHKTLV-DQMEEEMAKARREVQALAKELAAIHQSI 922
>U50468-1|AAA93472.1| 91|Anopheles gambiae protein ( Anopheles
gambiae putativetubulin alpha chain mRNA, complete cds.
).
Length = 91
Score = 27.1 bits (57), Expect = 0.47
Identities = 15/42 (35%), Positives = 24/42 (57%)
Frame = -1
Query: 127 ASPPAPRLSSDTTCRGPTSNDQSNGTSPSPSPKDLSLRCSTR 2
++P +PRL+ +TC P S+ S +S +P + CSTR
Sbjct: 49 STPSSPRLAQASTCPVPCSSIWSRPSSMRCAPA-RTASCSTR 89
>AB090813-2|BAC57902.1| 1099|Anopheles gambiae reverse transcriptase
protein.
Length = 1099
Score = 26.6 bits (56), Expect = 0.62
Identities = 15/46 (32%), Positives = 23/46 (50%)
Frame = +3
Query: 99 DERRGAGGEADQRPHHFVQGEDLESRARHARSAQGYRRQGT*RSRR 236
DER +++ HF + DLE+R R A+ RR + R+ R
Sbjct: 1013 DERAALAAHGNEQ--HFEEVADLEARRAEIRRARNDRRNASRRAAR 1056
>AJ010903-1|CAA09389.1| 373|Anopheles gambiae ICHIT protein
protein.
Length = 373
Score = 25.0 bits (52), Expect = 1.9
Identities = 10/37 (27%), Positives = 18/37 (48%)
Frame = -1
Query: 133 WSASPPAPRLSSDTTCRGPTSNDQSNGTSPSPSPKDL 23
WS PP P ++ T PT+ ++ + + + DL
Sbjct: 174 WSDQPPPPTTTTTTVWTDPTATTTTHAPTTTTTWSDL 210
Score = 23.0 bits (47), Expect = 7.7
Identities = 10/37 (27%), Positives = 18/37 (48%)
Frame = -1
Query: 133 WSASPPAPRLSSDTTCRGPTSNDQSNGTSPSPSPKDL 23
WS PP P ++ T PT+ ++ + + + DL
Sbjct: 207 WSDLPPPPPTTTTTVWIDPTATTTTHAPTTTTTWSDL 243
>AY344832-1|AAR05803.1| 333|Anopheles gambiae ICHIT protein.
Length = 333
Score = 24.6 bits (51), Expect = 2.5
Identities = 10/37 (27%), Positives = 18/37 (48%)
Frame = -1
Query: 133 WSASPPAPRLSSDTTCRGPTSNDQSNGTSPSPSPKDL 23
WS PP P ++ T PT+ + ++ + + DL
Sbjct: 173 WSDQPPPPTTTTTTVWTDPTATTTTPASTTTTTWSDL 209
Score = 23.0 bits (47), Expect = 7.7
Identities = 10/37 (27%), Positives = 18/37 (48%)
Frame = -1
Query: 133 WSASPPAPRLSSDTTCRGPTSNDQSNGTSPSPSPKDL 23
WS PP P ++ T PT+ ++ + + + DL
Sbjct: 206 WSDLPPPPPTTTTTVWIDPTATTTTHAPTTTTTWSDL 242
>AY344831-1|AAR05802.1| 333|Anopheles gambiae ICHIT protein.
Length = 333
Score = 24.6 bits (51), Expect = 2.5
Identities = 10/37 (27%), Positives = 18/37 (48%)
Frame = -1
Query: 133 WSASPPAPRLSSDTTCRGPTSNDQSNGTSPSPSPKDL 23
WS PP P ++ T PT+ + ++ + + DL
Sbjct: 173 WSDQPPPPTTTTTTVWTDPTATTTTPASTTTTTWSDL 209
>AY344835-1|AAR05806.1| 334|Anopheles gambiae ICHIT protein.
Length = 334
Score = 24.2 bits (50), Expect = 3.3
Identities = 11/33 (33%), Positives = 17/33 (51%)
Frame = -1
Query: 133 WSASPPAPRLSSDTTCRGPTSNDQSNGTSPSPS 35
WS PP P ++ T PT+ T+P+P+
Sbjct: 174 WSDQPPPPTTTTTTVWTDPTATT----TTPAPT 202
>AY344834-1|AAR05805.1| 334|Anopheles gambiae ICHIT protein.
Length = 334
Score = 24.2 bits (50), Expect = 3.3
Identities = 11/33 (33%), Positives = 17/33 (51%)
Frame = -1
Query: 133 WSASPPAPRLSSDTTCRGPTSNDQSNGTSPSPS 35
WS PP P ++ T PT+ T+P+P+
Sbjct: 174 WSDQPPPPTTTTTTVWTDPTATT----TTPAPT 202
Score = 23.0 bits (47), Expect = 7.7
Identities = 10/37 (27%), Positives = 18/37 (48%)
Frame = -1
Query: 133 WSASPPAPRLSSDTTCRGPTSNDQSNGTSPSPSPKDL 23
WS PP P ++ T PT+ ++ + + + DL
Sbjct: 207 WSDLPPPPPTTTTTVWIDPTATTTTHAPTTTTTWSDL 243
>AY344833-1|AAR05804.1| 334|Anopheles gambiae ICHIT protein.
Length = 334
Score = 23.0 bits (47), Expect = 7.7
Identities = 10/37 (27%), Positives = 18/37 (48%)
Frame = -1
Query: 133 WSASPPAPRLSSDTTCRGPTSNDQSNGTSPSPSPKDL 23
WS PP P ++ T PT+ ++ + + + DL
Sbjct: 207 WSDLPPPPPTTTTTVWIDPTATTTTHAPTTTTTWSDL 243
>AB090823-2|BAC57922.1| 1154|Anopheles gambiae reverse transcriptase
protein.
Length = 1154
Score = 23.0 bits (47), Expect = 7.7
Identities = 11/22 (50%), Positives = 14/22 (63%)
Frame = -2
Query: 93 RRAGVRHRMTRVTVRLHLHHQR 28
RRA +R RM R+ R H HQ+
Sbjct: 1086 RRANIRARMARLRQR-HRQHQQ 1106
Database: mosquito
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 563,979
Number of sequences in database: 2352
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 614,173
Number of Sequences: 2352
Number of extensions: 12299
Number of successful extensions: 41
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 32
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 41
length of database: 563,979
effective HSP length: 61
effective length of database: 420,507
effective search space used: 58870980
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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