Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1131X
         (309 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC18E5.07 |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    26   1.5  
SPCC18.03 |||shuttle craft like transcriptional regulator|Schizo...    25   1.9  
SPAC2G11.02 |urb2||ribosome biogenesis protein Urb2 |Schizosacch...    24   4.5  
SPCC13B11.01 |adh1|adh|alcohol dehydrogenase Adh1|Schizosaccharo...    24   5.9  
SPAC959.02 |sec17||alpha SNAP |Schizosaccharomyces pombe|chr 1||...    23   7.9  

>SPBC18E5.07 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 615

 Score = 25.8 bits (54), Expect = 1.5
 Identities = 12/24 (50%), Positives = 15/24 (62%)
 Frame = +1

Query: 73  GPVSSPTSSVNLE*PLEVTRIDVF 144
           GPV  P +SVN +    V+ IDVF
Sbjct: 550 GPVRRPPTSVNTKPSFSVSGIDVF 573


>SPCC18.03 |||shuttle craft like transcriptional
           regulator|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1077

 Score = 25.4 bits (53), Expect = 1.9
 Identities = 12/26 (46%), Positives = 17/26 (65%)
 Frame = +1

Query: 154 SVKTTASTRAPIFLPQSAMRRNCSKD 231
           S K   S  APIF+P S+++ N SK+
Sbjct: 62  SSKFHPSASAPIFVPTSSVQLNVSKN 87


>SPAC2G11.02 |urb2||ribosome biogenesis protein Urb2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1318

 Score = 24.2 bits (50), Expect = 4.5
 Identities = 12/33 (36%), Positives = 15/33 (45%)
 Frame = +1

Query: 208 MRRNCSKDFYLVPDIDYMLLQL*KNGTPHHRDH 306
           M+  CS  FY  P I   L+Q  K     H+ H
Sbjct: 801 MKTPCSSGFYRDPKIIIDLMQFGKTDLSFHKVH 833


>SPCC13B11.01 |adh1|adh|alcohol dehydrogenase
           Adh1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 350

 Score = 23.8 bits (49), Expect = 5.9
 Identities = 6/20 (30%), Positives = 15/20 (75%)
 Frame = -2

Query: 224 LQLRRMALCGKNIGARVDAV 165
           L ++ + +CG ++G R+D++
Sbjct: 286 LTVKMLKICGSHVGNRIDSI 305


>SPAC959.02 |sec17||alpha SNAP |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 289

 Score = 23.4 bits (48), Expect = 7.9
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = -3

Query: 304 DHDDAASRFFIAVKAYNR 251
           D DDAAS +  A K+Y R
Sbjct: 70  DKDDAASTYVEAFKSYRR 87


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 833,888
Number of Sequences: 5004
Number of extensions: 12629
Number of successful extensions: 36
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 36
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 36
length of database: 2,362,478
effective HSP length: 63
effective length of database: 2,047,226
effective search space used: 79841814
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)