Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1131X
         (309 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_0440 - 25219961-25221529                                         31   0.18 
04_01_0579 - 7515242-7516241,7516366-7516393,7516574-7516631           27   4.0  
03_02_0908 - 12308192-12308431,12309481-12309693                       25   9.2  

>04_04_0440 - 25219961-25221529
          Length = 522

 Score = 31.1 bits (67), Expect = 0.18
 Identities = 16/40 (40%), Positives = 21/40 (52%)
 Frame = +1

Query: 118 LEVTRIDVFPVASVKTTASTRAPIFLPQSAMRRNCSKDFY 237
           L V R+   P  +  TTA T   +F P S++R  C KD Y
Sbjct: 187 LSVKRLRGLPDTAGATTAITEEILFPPASSLRSVCLKDLY 226


>04_01_0579 - 7515242-7516241,7516366-7516393,7516574-7516631
          Length = 361

 Score = 26.6 bits (56), Expect = 4.0
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = +1

Query: 202 SAMRRNCSKDFYLVPDIDYMLLQL*KNGTPHH 297
           +A+  + SKD YL  + DY+L  L    T H+
Sbjct: 287 AALASHVSKDVYLFKENDYLLFHLTPGETNHY 318


>03_02_0908 - 12308192-12308431,12309481-12309693
          Length = 150

 Score = 25.4 bits (53), Expect = 9.2
 Identities = 11/39 (28%), Positives = 16/39 (41%)
 Frame = -1

Query: 234 KVFTAIATHGALRQKYRGPRRRCCFYRSNRKNVYSSNLE 118
           ++ TA   HG    + RGP+     Y  N    Y+   E
Sbjct: 30  RLITATVRHGHGHSRGRGPKESVTLYSDNTGEEYADEAE 68


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,409,328
Number of Sequences: 37544
Number of extensions: 78886
Number of successful extensions: 189
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 189
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 189
length of database: 14,793,348
effective HSP length: 71
effective length of database: 12,127,724
effective search space used: 375959444
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)