Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1131X
         (309 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AE014298-2511|AAF48688.1| 1048|Drosophila melanogaster CG9059-PB...    28   2.7  
AE014298-2510|AAN09430.2| 1077|Drosophila melanogaster CG9059-PA...    28   2.7  
BT029428-1|ABK57085.1|  710|Drosophila melanogaster IP09654p pro...    27   6.2  
BT025109-1|ABE73280.1|  412|Drosophila melanogaster IP10459p pro...    27   6.2  
AE013599-3613|AAF47014.1|  361|Drosophila melanogaster CG13556-P...    27   6.2  

>AE014298-2511|AAF48688.1| 1048|Drosophila melanogaster CG9059-PB,
           isoform B protein.
          Length = 1048

 Score = 27.9 bits (59), Expect = 2.7
 Identities = 16/50 (32%), Positives = 24/50 (48%), Gaps = 2/50 (4%)
 Frame = +1

Query: 154 SVKTTASTRAPIFLPQSAMRRNCSKDFYLVPDIDYMLLQL*KN--GTPHH 297
           S+   A     I +  S  R+  ++ F + PD  Y+LLQ   N  G+ HH
Sbjct: 96  SILNMADLTTRILMTNSTFRQLNAESFLVAPDQKYVLLQSDSNAEGSRHH 145


>AE014298-2510|AAN09430.2| 1077|Drosophila melanogaster CG9059-PA,
           isoform A protein.
          Length = 1077

 Score = 27.9 bits (59), Expect = 2.7
 Identities = 16/50 (32%), Positives = 24/50 (48%), Gaps = 2/50 (4%)
 Frame = +1

Query: 154 SVKTTASTRAPIFLPQSAMRRNCSKDFYLVPDIDYMLLQL*KN--GTPHH 297
           S+   A     I +  S  R+  ++ F + PD  Y+LLQ   N  G+ HH
Sbjct: 125 SILNMADLTTRILMTNSTFRQLNAESFLVAPDQKYVLLQSDSNAEGSRHH 174


>BT029428-1|ABK57085.1|  710|Drosophila melanogaster IP09654p
           protein.
          Length = 710

 Score = 26.6 bits (56), Expect = 6.2
 Identities = 14/33 (42%), Positives = 17/33 (51%)
 Frame = +2

Query: 194 CRRAPCVAIAVKTFI*YLISIICFYSYKKTGRR 292
           C+RAP   +  +  I Y I   C   YK TGRR
Sbjct: 556 CKRAPRNLLEAELSISYQICDNCRSKYKLTGRR 588


>BT025109-1|ABE73280.1|  412|Drosophila melanogaster IP10459p
           protein.
          Length = 412

 Score = 26.6 bits (56), Expect = 6.2
 Identities = 14/33 (42%), Positives = 17/33 (51%)
 Frame = +2

Query: 194 CRRAPCVAIAVKTFI*YLISIICFYSYKKTGRR 292
           C+RAP   +  +  I Y I   C   YK TGRR
Sbjct: 258 CKRAPRNLLEAELSISYQICDNCRSKYKLTGRR 290


>AE013599-3613|AAF47014.1|  361|Drosophila melanogaster CG13556-PA
           protein.
          Length = 361

 Score = 26.6 bits (56), Expect = 6.2
 Identities = 14/33 (42%), Positives = 17/33 (51%)
 Frame = +2

Query: 194 CRRAPCVAIAVKTFI*YLISIICFYSYKKTGRR 292
           C+RAP   +  +  I Y I   C   YK TGRR
Sbjct: 207 CKRAPRNLLEAELSISYQICDNCRSKYKLTGRR 239


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,126,343
Number of Sequences: 53049
Number of extensions: 137585
Number of successful extensions: 287
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 284
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 287
length of database: 24,988,368
effective HSP length: 74
effective length of database: 21,062,742
effective search space used: 589756776
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)