Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1131X
         (309 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z69903-7|CAA93776.1| 1607|Caenorhabditis elegans Hypothetical pr...    27   2.0  
Z69660-1|CAA93489.1| 1607|Caenorhabditis elegans Hypothetical pr...    27   2.0  
Z81512-3|CAE46668.1| 3175|Caenorhabditis elegans Hypothetical pr...    27   2.7  
Z81512-2|CAB04172.2| 3184|Caenorhabditis elegans Hypothetical pr...    27   2.7  
Z68749-3|CAA92958.1|  288|Caenorhabditis elegans Hypothetical pr...    25   8.1  
AF244356-1|AAF70462.1|  288|Caenorhabditis elegans long chain po...    25   8.1  

>Z69903-7|CAA93776.1| 1607|Caenorhabditis elegans Hypothetical
           protein F39B1.1 protein.
          Length = 1607

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 10/37 (27%), Positives = 22/37 (59%)
 Frame = +1

Query: 199 QSAMRRNCSKDFYLVPDIDYMLLQL*KNGTPHHRDHS 309
           ++ +R++ + DF++ P +DYM+          ++DHS
Sbjct: 338 RNLIRKDMTPDFFIAPTVDYMVTTASTVKVVVYKDHS 374


>Z69660-1|CAA93489.1| 1607|Caenorhabditis elegans Hypothetical
           protein F39B1.1 protein.
          Length = 1607

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 10/37 (27%), Positives = 22/37 (59%)
 Frame = +1

Query: 199 QSAMRRNCSKDFYLVPDIDYMLLQL*KNGTPHHRDHS 309
           ++ +R++ + DF++ P +DYM+          ++DHS
Sbjct: 338 RNLIRKDMTPDFFIAPTVDYMVTTASTVKVVVYKDHS 374


>Z81512-3|CAE46668.1| 3175|Caenorhabditis elegans Hypothetical
           protein F25C8.3b protein.
          Length = 3175

 Score = 27.1 bits (57), Expect = 2.7
 Identities = 11/31 (35%), Positives = 20/31 (64%)
 Frame = +1

Query: 139 VFPVASVKTTASTRAPIFLPQSAMRRNCSKD 231
           V P+A   TT +T  P+ LP+SA+ +  +++
Sbjct: 471 VIPLAMPVTTETTTLPVTLPKSALTKTTNEN 501


>Z81512-2|CAB04172.2| 3184|Caenorhabditis elegans Hypothetical
           protein F25C8.3a protein.
          Length = 3184

 Score = 27.1 bits (57), Expect = 2.7
 Identities = 11/31 (35%), Positives = 20/31 (64%)
 Frame = +1

Query: 139 VFPVASVKTTASTRAPIFLPQSAMRRNCSKD 231
           V P+A   TT +T  P+ LP+SA+ +  +++
Sbjct: 471 VIPLAMPVTTETTTLPVTLPKSALTKTTNEN 501


>Z68749-3|CAA92958.1|  288|Caenorhabditis elegans Hypothetical
           protein F56H11.4 protein.
          Length = 288

 Score = 25.4 bits (53), Expect = 8.1
 Identities = 9/20 (45%), Positives = 15/20 (75%)
 Frame = -1

Query: 264 KHIIDIRY*IKVFTAIATHG 205
           + ++D+++  K F AIATHG
Sbjct: 8   QRLLDVKFDTKRFVAIATHG 27


>AF244356-1|AAF70462.1|  288|Caenorhabditis elegans long chain
           polyunsaturated fattyacid elongation enzyme protein.
          Length = 288

 Score = 25.4 bits (53), Expect = 8.1
 Identities = 9/20 (45%), Positives = 15/20 (75%)
 Frame = -1

Query: 264 KHIIDIRY*IKVFTAIATHG 205
           + ++D+++  K F AIATHG
Sbjct: 8   QRLLDVKFDTKRFVAIATHG 27


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,686,384
Number of Sequences: 27780
Number of extensions: 70792
Number of successful extensions: 193
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 193
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 193
length of database: 12,740,198
effective HSP length: 71
effective length of database: 10,767,818
effective search space used: 333802358
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)