Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1131X
         (309 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB072429-1|BAB83990.1|  388|Apis mellifera IP3phosphatase protein.     23   1.1  
AJ780964-1|CAG62942.2|  332|Apis mellifera putative corticotropi...    21   3.4  
DQ011227-1|AAY63896.1|  484|Apis mellifera Amt-1-like protein pr...    20   5.9  
AY273778-1|AAP33487.1|  427|Apis mellifera ultraspiracle protein...    20   7.8  
AF263459-1|AAF73057.1|  427|Apis mellifera ultraspiracle protein...    20   7.8  

>AB072429-1|BAB83990.1|  388|Apis mellifera IP3phosphatase protein.
          Length = 388

 Score = 22.6 bits (46), Expect = 1.1
 Identities = 10/33 (30%), Positives = 16/33 (48%)
 Frame = -1

Query: 210 HGALRQKYRGPRRRCCFYRSNRKNVYSSNLEGL 112
           H +L+       + C F   N K V+S N+E +
Sbjct: 107 HESLKNVLLWDFQECTFISVNGKEVHSGNIEAV 139


>AJ780964-1|CAG62942.2|  332|Apis mellifera putative corticotropin
           releasing hormone-binding protein protein.
          Length = 332

 Score = 21.0 bits (42), Expect = 3.4
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = -2

Query: 224 LQLRRMALCGKNIGAR 177
           L+ R    CGKNIG +
Sbjct: 144 LKQRSSEFCGKNIGMK 159


>DQ011227-1|AAY63896.1|  484|Apis mellifera Amt-1-like protein
           protein.
          Length = 484

 Score = 20.2 bits (40), Expect = 5.9
 Identities = 8/20 (40%), Positives = 10/20 (50%)
 Frame = -3

Query: 265 KAYNRYQVLNKSLYCNCDAW 206
           KAY  +  LN  +YC    W
Sbjct: 146 KAYCLFSFLNTIVYCVPAGW 165


>AY273778-1|AAP33487.1|  427|Apis mellifera ultraspiracle protein
           protein.
          Length = 427

 Score = 19.8 bits (39), Expect = 7.8
 Identities = 7/21 (33%), Positives = 12/21 (57%)
 Frame = +2

Query: 167 QRLRGPLYFCRRAPCVAIAVK 229
           +R R    +CR   C+A+ +K
Sbjct: 156 KRQRNRCQYCRYQKCLAMGMK 176


>AF263459-1|AAF73057.1|  427|Apis mellifera ultraspiracle protein
           protein.
          Length = 427

 Score = 19.8 bits (39), Expect = 7.8
 Identities = 7/21 (33%), Positives = 12/21 (57%)
 Frame = +2

Query: 167 QRLRGPLYFCRRAPCVAIAVK 229
           +R R    +CR   C+A+ +K
Sbjct: 156 KRQRNRCQYCRYQKCLAMGMK 176


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 58,656
Number of Sequences: 438
Number of extensions: 1010
Number of successful extensions: 6
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 50
effective length of database: 124,443
effective search space used:  6471036
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (20.3 bits)