Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1131X
         (309 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g18520.2 68416.m02354 histone deacetylase family protein simi...    27   3.4  
At3g18520.1 68416.m02353 histone deacetylase family protein simi...    27   3.4  
At1g15510.1 68414.m01866 pentatricopeptide (PPR) repeat-containi...    27   3.4  

>At3g18520.2 68416.m02354 histone deacetylase family protein similar
           to SP|P53973 Histone deacetylase HDA1 {Saccharomyces
           cerevisiae}; contains Pfam profile PF00850: Histone
           deacetylase family; AT-acceptor splice site at intron 7
          Length = 556

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 10/18 (55%), Positives = 14/18 (77%)
 Frame = -2

Query: 128 VTSRGYSRFTELVGELTG 75
           VT  GYSR T+++G+L G
Sbjct: 420 VTPAGYSRMTQMLGDLCG 437


>At3g18520.1 68416.m02353 histone deacetylase family protein similar
           to SP|P53973 Histone deacetylase HDA1 {Saccharomyces
           cerevisiae}; contains Pfam profile PF00850: Histone
           deacetylase family; AT-acceptor splice site at intron 7
          Length = 552

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 10/18 (55%), Positives = 14/18 (77%)
 Frame = -2

Query: 128 VTSRGYSRFTELVGELTG 75
           VT  GYSR T+++G+L G
Sbjct: 416 VTPAGYSRMTQMLGDLCG 433


>At1g15510.1 68414.m01866 pentatricopeptide (PPR) repeat-containing
           protein contains INTERPRO:IPR002885 PPR repeats
          Length = 866

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 12/35 (34%), Positives = 17/35 (48%)
 Frame = -3

Query: 292 AASRFFIAVKAYNRYQVLNKSLYCNCDAWRSAAKI 188
           +A   F   K    Y +L  +LY +C  WR  AK+
Sbjct: 687 SAQHIFELDKKSVGYYILLCNLYADCGKWREVAKV 721


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,339,840
Number of Sequences: 28952
Number of extensions: 63768
Number of successful extensions: 167
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 166
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 167
length of database: 12,070,560
effective HSP length: 70
effective length of database: 10,043,920
effective search space used: 321405440
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)