Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1130
         (820 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q17A66 Cluster: Mixed-lineage leukemia protein, mll; n=...    36   1.2  
UniRef50_Q54GF5 Cluster: Putative uncharacterized protein; n=1; ...    34   5.0  
UniRef50_Q75BN5 Cluster: ACR236Wp; n=1; Eremothecium gossypii|Re...    33   8.7  

>UniRef50_Q17A66 Cluster: Mixed-lineage leukemia protein, mll; n=2;
           Culicidae|Rep: Mixed-lineage leukemia protein, mll -
           Aedes aegypti (Yellowfever mosquito)
          Length = 2874

 Score = 35.9 bits (79), Expect = 1.2
 Identities = 17/48 (35%), Positives = 27/48 (56%)
 Frame = +1

Query: 505 LITYVHFRAETSGTQSLANVRRQPQQTPPPIYQETIKDSPPSSPGNRT 648
           LI  ++  A  SGTQ +A  + +P   P  +YQ  ++ +PP+ P N T
Sbjct: 54  LINPLNKAAGPSGTQPIAQPQMEPTHKPIQMYQANLQPAPPAPPENIT 101


>UniRef50_Q54GF5 Cluster: Putative uncharacterized protein; n=1;
           Dictyostelium discoideum AX4|Rep: Putative
           uncharacterized protein - Dictyostelium discoideum AX4
          Length = 1275

 Score = 33.9 bits (74), Expect = 5.0
 Identities = 22/73 (30%), Positives = 32/73 (43%), Gaps = 1/73 (1%)
 Frame = +1

Query: 547 QSLANVRRQPQQTPPPIYQETIKDSPPSSPGNRTTRTNIINAYK*CMD-NTHTALMHNML 723
           QS       PQ +PP     T   S  ++    TT+TNI    K  +  +T TA + +  
Sbjct: 241 QSSVTTTSSPQTSPPIASNTTTSSSTTTTTTTTTTKTNITTPTKNTLSMSTTTATLTSSP 300

Query: 724 CCDNSNKHYGINI 762
             + +NK Y  NI
Sbjct: 301 TINYNNKTYSTNI 313


>UniRef50_Q75BN5 Cluster: ACR236Wp; n=1; Eremothecium gossypii|Rep:
           ACR236Wp - Ashbya gossypii (Yeast) (Eremothecium
           gossypii)
          Length = 736

 Score = 33.1 bits (72), Expect = 8.7
 Identities = 20/64 (31%), Positives = 33/64 (51%)
 Frame = +1

Query: 508 ITYVHFRAETSGTQSLANVRRQPQQTPPPIYQETIKDSPPSSPGNRTTRTNIINAYK*CM 687
           + YVH  + T+G+ +   V+  P +  PP  +ET K   P++P  R   T + + Y+   
Sbjct: 577 LAYVH-PSFTNGSTAEYGVK--PVRRNPPAIRETPKVGSPATPEERDDMTPLEDVYEDSF 633

Query: 688 DNTH 699
           D TH
Sbjct: 634 DQTH 637


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 767,540,750
Number of Sequences: 1657284
Number of extensions: 14932480
Number of successful extensions: 39524
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 37302
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 39471
length of database: 575,637,011
effective HSP length: 99
effective length of database: 411,565,895
effective search space used: 71200899835
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)