Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1130
         (820 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1 |Schizosacch...    27   2.4  
SPAC12B10.01c ||SPAC31F12.02c, SPAC637.15c|ubiquitin-protein lig...    27   4.2  
SPAC1A6.09c |lag1||sphingosine N-acyltransferase Lag1|Schizosacc...    27   4.2  
SPAC644.06c |cdr1|nim1|GIN4 family protein kinase Cdr1|Schizosac...    27   4.2  
SPBC26H8.13c |||sequence orphan|Schizosaccharomyces pombe|chr 2|...    26   5.6  
SPAPB18E9.02c |ppk18||serine/threonine protein kinase Ppk18 |Sch...    26   5.6  
SPCC18B5.03 |wee1||dual specificity protein kinase Wee1|Schizosa...    26   5.6  
SPBC947.05c |||ferric-chelate reductase |Schizosaccharomyces pom...    26   7.4  
SPAC959.10 |sen15||tRNA-splicing endonuclease subunit Sen15|Schi...    25   9.8  

>SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 754

 Score = 27.5 bits (58), Expect = 2.4
 Identities = 14/32 (43%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
 Frame = +2

Query: 50  YFIMLPTVSVGWPVLAKTIWARF-PYARCRRL 142
           YF +   +S+GWP LAKT   +F P A+  R+
Sbjct: 7   YFRIEGMISLGWPRLAKTSILKFVPIAQNHRI 38


>SPAC12B10.01c ||SPAC31F12.02c, SPAC637.15c|ubiquitin-protein ligase
           E3 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1647

 Score = 26.6 bits (56), Expect = 4.2
 Identities = 12/24 (50%), Positives = 18/24 (75%)
 Frame = +1

Query: 289 SYTGIERVVYSLGTSXNIIKPIIS 360
           +Y+ +E ++ SL TS NII+ IIS
Sbjct: 563 AYSCLETIIESLKTSPNIIETIIS 586


>SPAC1A6.09c |lag1||sphingosine N-acyltransferase
           Lag1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 390

 Score = 26.6 bits (56), Expect = 4.2
 Identities = 15/33 (45%), Positives = 18/33 (54%)
 Frame = -3

Query: 704 AVWVLSIHYL*ALIMLVRVVRLPGELGGESLIV 606
           A WV S HYL + I+ V V   P  +GG  L V
Sbjct: 292 ASWVYSRHYLFSKILRVVVTNAPEIIGGFHLDV 324


>SPAC644.06c |cdr1|nim1|GIN4 family protein kinase
           Cdr1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 593

 Score = 26.6 bits (56), Expect = 4.2
 Identities = 12/32 (37%), Positives = 15/32 (46%)
 Frame = +3

Query: 510 YIRTFPSRNFGYTIIG*CTPSTAADPASDIPG 605
           Y+R FPS     T  G  TP + + P   I G
Sbjct: 476 YVRIFPSTTLSSTASGYYTPDSLSTPEPSIDG 507


>SPBC26H8.13c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 124

 Score = 26.2 bits (55), Expect = 5.6
 Identities = 17/53 (32%), Positives = 31/53 (58%), Gaps = 1/53 (1%)
 Frame = -1

Query: 433 FSQNERYAQDLRTCGLCNKKNC*SMKL*V**C-XXKFPSCILPVQYLYKIQTN 278
           FS+N  +    RTC +C++KN  +M+L V  C   K  +C + ++  +K ++N
Sbjct: 51  FSENRGF----RTCHVCHRKN--NMRLKVGTCESCKKHTCAICIRQCHKCESN 97


>SPAPB18E9.02c |ppk18||serine/threonine protein kinase Ppk18
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1316

 Score = 26.2 bits (55), Expect = 5.6
 Identities = 12/29 (41%), Positives = 15/29 (51%)
 Frame = +3

Query: 105  YGPGSHMPDAAGYQEQETSSDGVCRQHGA 191
            Y PGS MP A  Y +Q T S  +    G+
Sbjct: 1068 YTPGSDMPSAKLYDQQLTLSPSLMTNQGS 1096


>SPCC18B5.03 |wee1||dual specificity protein kinase
           Wee1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 877

 Score = 26.2 bits (55), Expect = 5.6
 Identities = 11/52 (21%), Positives = 27/52 (51%)
 Frame = +1

Query: 544 TQSLANVRRQPQQTPPPIYQETIKDSPPSSPGNRTTRTNIINAYK*CMDNTH 699
           + S++N    P    P  + ++ +  PPS+P  +  + N  ++++  + N+H
Sbjct: 164 SSSMSNGAMSPPSHSPSPFLQSSQHIPPSTPAQKLRKKNNFDSFR--ISNSH 213


>SPBC947.05c |||ferric-chelate reductase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 564

 Score = 25.8 bits (54), Expect = 7.4
 Identities = 12/23 (52%), Positives = 16/23 (69%)
 Frame = -3

Query: 155 FLFLIAGGIGHMGTGPILSLLVL 87
           ++ LIAGG+G   T PIL  L+L
Sbjct: 416 YVLLIAGGVGFSYTLPILRDLIL 438


>SPAC959.10 |sen15||tRNA-splicing endonuclease subunit
           Sen15|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 143

 Score = 25.4 bits (53), Expect = 9.8
 Identities = 11/28 (39%), Positives = 18/28 (64%)
 Frame = +2

Query: 212 LPVLHVHQDRLQYVLPLIRRTKIGLDLI 295
           +PV    +D+LQYVLPL  +  I ++ +
Sbjct: 59  IPVNGQLKDKLQYVLPLYLQETISIEFL 86


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,171,033
Number of Sequences: 5004
Number of extensions: 61492
Number of successful extensions: 144
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 141
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 144
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 400438000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)