Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1130
         (820 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_11360| Best HMM Match : PDZ (HMM E-Value=0)                         31   1.5  
SB_21869| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.5  
SB_27123| Best HMM Match : FecCD (HMM E-Value=0.12)                    28   7.9  

>SB_11360| Best HMM Match : PDZ (HMM E-Value=0)
          Length = 625

 Score = 30.7 bits (66), Expect = 1.5
 Identities = 14/32 (43%), Positives = 18/32 (56%)
 Frame = +1

Query: 544 TQSLANVRRQPQQTPPPIYQETIKDSPPSSPG 639
           T S  +    P+QTPPP   E I+ +P  SPG
Sbjct: 110 TDSAPSPPTLPKQTPPPPTPEVIETAPSPSPG 141


>SB_21869| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1123

 Score = 29.1 bits (62), Expect = 4.5
 Identities = 13/43 (30%), Positives = 27/43 (62%)
 Frame = -3

Query: 719  ILCMSAVWVLSIHYL*ALIMLVRVVRLPGELGGESLIVSWYIG 591
            ILCM AV + + H L ++I+++ ++ +   + G   +V W++G
Sbjct: 921  ILCMVAVVIFTGHILLSIIVMLTILGVLCLVVGVFYLVGWHLG 963


>SB_27123| Best HMM Match : FecCD (HMM E-Value=0.12)
          Length = 587

 Score = 28.3 bits (60), Expect = 7.9
 Identities = 11/33 (33%), Positives = 21/33 (63%)
 Frame = +1

Query: 313 VYSLGTSXNIIKPIISLINNFFCYITRKCVSLV 411
           VY +    N++  II++  N + YI R+C+++V
Sbjct: 233 VYLMHCVRNVVFIIINIPANIYAYIIRRCLAIV 265


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,134,718
Number of Sequences: 59808
Number of extensions: 482711
Number of successful extensions: 1172
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1059
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1169
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2287608719
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)