Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1130
         (820 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U23139-1|AAK31493.2|  513|Caenorhabditis elegans Hypothetical pr...    31   0.99 
Z72511-1|CAA96655.1|  186|Caenorhabditis elegans Hypothetical pr...    30   1.7  
Z46933-4|CAA87037.1|  452|Caenorhabditis elegans Hypothetical pr...    29   3.0  
Z67884-4|CAH60753.1|  905|Caenorhabditis elegans Hypothetical pr...    28   7.0  
Z67884-3|CAA91809.2|  921|Caenorhabditis elegans Hypothetical pr...    28   7.0  
AL110487-3|CAB54426.1|  223|Caenorhabditis elegans Hypothetical ...    28   9.2  

>U23139-1|AAK31493.2|  513|Caenorhabditis elegans Hypothetical
           protein F13H8.5 protein.
          Length = 513

 Score = 31.1 bits (67), Expect = 0.99
 Identities = 13/26 (50%), Positives = 17/26 (65%), Gaps = 2/26 (7%)
 Frame = +1

Query: 565 RRQPQQTPPPIYQET--IKDSPPSSP 636
           ++QPQ  PPPIY +T  I  +PP  P
Sbjct: 111 QQQPQPAPPPIYSQTVVIPQAPPPPP 136


>Z72511-1|CAA96655.1|  186|Caenorhabditis elegans Hypothetical
           protein F55A11.1 protein.
          Length = 186

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 19/44 (43%), Positives = 23/44 (52%), Gaps = 3/44 (6%)
 Frame = +1

Query: 499 VKLITYVHFRAETSG---TQSLANVRRQPQQTPPPIYQETIKDS 621
           +K IT  HF AE  G   TQ+ AN   QP   P  +  ET+ DS
Sbjct: 102 IKAIT--HFHAENPGPQHTQNNANANHQPPPLPSEVELETMIDS 143


>Z46933-4|CAA87037.1|  452|Caenorhabditis elegans Hypothetical
           protein F34H10.4 protein.
          Length = 452

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 12/24 (50%), Positives = 15/24 (62%)
 Frame = +1

Query: 571 QPQQTPPPIYQETIKDSPPSSPGN 642
           Q Q+  PP++     DSPP SPGN
Sbjct: 196 QLQRDHPPLFHLNAFDSPPPSPGN 219


>Z67884-4|CAH60753.1|  905|Caenorhabditis elegans Hypothetical
           protein T14G8.3b protein.
          Length = 905

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 15/49 (30%), Positives = 22/49 (44%)
 Frame = +1

Query: 487 QKRNVKLITYVHFRAETSGTQSLANVRRQPQQTPPPIYQETIKDSPPSS 633
           +K+  K    V  R E   T++    +   QQTPPP   +  KD   +S
Sbjct: 842 KKKTKKEKDTVKERKEEETTETTTEDQANEQQTPPPFENDNTKDDESAS 890


>Z67884-3|CAA91809.2|  921|Caenorhabditis elegans Hypothetical protein
            T14G8.3a protein.
          Length = 921

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 15/49 (30%), Positives = 22/49 (44%)
 Frame = +1

Query: 487  QKRNVKLITYVHFRAETSGTQSLANVRRQPQQTPPPIYQETIKDSPPSS 633
            +K+  K    V  R E   T++    +   QQTPPP   +  KD   +S
Sbjct: 858  KKKTKKEKDTVKERKEEETTETTTEDQANEQQTPPPFENDNTKDDESAS 906


>AL110487-3|CAB54426.1|  223|Caenorhabditis elegans Hypothetical
           protein Y39E4B.4 protein.
          Length = 223

 Score = 27.9 bits (59), Expect = 9.2
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = +2

Query: 47  LYFIMLPTVSVGWPVLAKTIWARF 118
           L+F+ L    VG+ V+A T+W RF
Sbjct: 12  LFFLNLAQTLVGFTVIALTLWIRF 35


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,769,208
Number of Sequences: 27780
Number of extensions: 364523
Number of successful extensions: 1053
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 987
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1051
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 2019417216
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)