Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1130
         (820 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.          22   5.9  
EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.      22   5.9  
U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive o...    22   7.8  
EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase p...    22   7.8  
DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholi...    22   7.8  
AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin ...    22   7.8  
AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.      22   7.8  

>EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.
          Length = 684

 Score = 22.2 bits (45), Expect = 5.9
 Identities = 12/43 (27%), Positives = 21/43 (48%), Gaps = 2/43 (4%)
 Frame = +2

Query: 41  QPLYFIMLPTV--SVGWPVLAKTIWARFPYARCRRLSGTRNEQ 163
           +P Y    PT+  S G P   + IW+ FP  + + +    N++
Sbjct: 289 KPFYPGYYPTMTYSNGLPFPQRPIWSNFPIYKYKYIREIMNKE 331


>EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.
          Length = 684

 Score = 22.2 bits (45), Expect = 5.9
 Identities = 12/43 (27%), Positives = 21/43 (48%), Gaps = 2/43 (4%)
 Frame = +2

Query: 41  QPLYFIMLPTV--SVGWPVLAKTIWARFPYARCRRLSGTRNEQ 163
           +P Y    PT+  S G P   + IW+ FP  + + +    N++
Sbjct: 289 KPFYPGYYPTMTYSNGLPFPQRPIWSNFPIYKYKYIREIMNKE 331


>U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive
           opsin protein.
          Length = 377

 Score = 21.8 bits (44), Expect = 7.8
 Identities = 5/20 (25%), Positives = 14/20 (70%)
 Frame = -2

Query: 699 VGVVHTLFVSVNYVGTCCTI 640
           + +++++ + ++ VG CC I
Sbjct: 60  LAIIYSMLLIMSLVGNCCVI 79


>EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase
           protein.
          Length = 620

 Score = 21.8 bits (44), Expect = 7.8
 Identities = 8/12 (66%), Positives = 9/12 (75%)
 Frame = -3

Query: 554 NDCVPEVSARKC 519
           NDC  EV AR+C
Sbjct: 315 NDCHAEVVARRC 326


>DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholine
           receptor beta2subunit protein.
          Length = 427

 Score = 21.8 bits (44), Expect = 7.8
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = +2

Query: 701 LHSCIICFVAIIRTSITALTFLFTFYYAN 787
           LH  +ICFV    TS +AL  L  + + +
Sbjct: 19  LHGQVICFVCKDITSTSALYRLKLYLFCD 47


>AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin
           protein.
          Length = 377

 Score = 21.8 bits (44), Expect = 7.8
 Identities = 5/20 (25%), Positives = 14/20 (70%)
 Frame = -2

Query: 699 VGVVHTLFVSVNYVGTCCTI 640
           + +++++ + ++ VG CC I
Sbjct: 60  LAIIYSMLLIMSLVGNCCVI 79


>AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.
          Length = 429

 Score = 21.8 bits (44), Expect = 7.8
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = +1

Query: 556 ANVRRQPQQTPPPIYQETIKDSPPSSP 636
           A +RR  ++TP P + ET K     SP
Sbjct: 174 AQIRRNERRTPDP-HDETAKKPRVLSP 199


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 225,133
Number of Sequences: 438
Number of extensions: 4628
Number of successful extensions: 10
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 26096055
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)