Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--1130
(820 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g25430.1 68415.m03046 epsin N-terminal homology (ENTH) domain... 32 0.53
At4g30430.1 68417.m04322 senescence-associated family protein si... 31 0.92
At1g40125.1 68414.m04763 hypothetical protein member of hypothet... 30 2.1
At5g51680.1 68418.m06407 hydroxyproline-rich glycoprotein family... 29 2.8
At5g06100.2 68418.m00678 myb family transcription factor (MYB33)... 29 3.7
At5g06100.1 68418.m00677 myb family transcription factor (MYB33)... 29 3.7
At3g30670.1 68416.m03887 hypothetical protein 29 3.7
At3g57420.1 68416.m06393 expressed protein contains Pfam domain ... 28 6.5
At1g02310.1 68414.m00176 glycosyl hydrolase family protein 5 / c... 28 6.5
At1g62440.1 68414.m07044 leucine-rich repeat family protein / ex... 28 8.6
>At2g25430.1 68415.m03046 epsin N-terminal homology (ENTH)
domain-containing protein contains Pfam PF01417: ENTH
domain. ENTH (Epsin N-terminal homology) domain;
Length = 653
Score = 31.9 bits (69), Expect = 0.53
Identities = 14/27 (51%), Positives = 16/27 (59%)
Frame = +1
Query: 58 YVADSVSGMASTSKDNMGPVPICPMPP 138
Y D + G AS +K N GPVP MPP
Sbjct: 610 YQRDGMRGQASLAKMNTGPVPAYGMPP 636
>At4g30430.1 68417.m04322 senescence-associated family protein
similar to senescence-associated protein 5 [Hemerocallis
hybrid cultivar] gi|3551954|gb|AAC34855
Length = 272
Score = 31.1 bits (67), Expect = 0.92
Identities = 11/35 (31%), Positives = 18/35 (51%)
Frame = -2
Query: 702 SVGVVHTLFVSVNYVGTCCTITWRAWR*IFDSFLV 598
++GV + VG+CC +TW W +F F +
Sbjct: 48 ALGVFLMIIAIAGVVGSCCRVTWLLWSYLFVMFFL 82
>At1g40125.1 68414.m04763 hypothetical protein member of
hypothetical protein common family
Length = 168
Score = 29.9 bits (64), Expect = 2.1
Identities = 15/43 (34%), Positives = 20/43 (46%)
Frame = +1
Query: 520 HFRAETSGTQSLANVRRQPQQTPPPIYQETIKDSPPSSPGNRT 648
H+R Q + QPQ+ P QET + PP SP +T
Sbjct: 68 HYRNYPPPQQLFQHSTNQPQRVDPLPPQETAQQDPPLSPDPKT 110
>At5g51680.1 68418.m06407 hydroxyproline-rich glycoprotein family
protein contains proline-rich extensin domains,
INTERPRO:IPR002965; similar to hydroxyproline-rich
Glycoprotein (HRGP) [Zea mays] gi|4007865|emb|CAA10387
Length = 343
Score = 29.5 bits (63), Expect = 2.8
Identities = 19/47 (40%), Positives = 22/47 (46%), Gaps = 1/47 (2%)
Frame = +1
Query: 499 VKLITYVHFR-AETSGTQSLANVRRQPQQTPPPIYQETIKDSPPSSP 636
VKL+T V FR ET G A+ PQ PP+ T PP P
Sbjct: 59 VKLVTSVPFRWEETPGKPLPASSNDPPQLPHPPLETATPTPLPPPVP 105
>At5g06100.2 68418.m00678 myb family transcription factor (MYB33)
contains Pfam profile: PF00249 myb DNA-binding domain
Length = 520
Score = 29.1 bits (62), Expect = 3.7
Identities = 15/33 (45%), Positives = 16/33 (48%), Gaps = 1/33 (3%)
Frame = -2
Query: 162 CSFLVPDSRRHRAYGNRAHIVFASTGH-PTDTV 67
CSF VP H YGNR V H PTD +
Sbjct: 268 CSFSVPCDVEHPLYGNRHSPVMIPDSHTPTDGI 300
>At5g06100.1 68418.m00677 myb family transcription factor (MYB33)
contains Pfam profile: PF00249 myb DNA-binding domain
Length = 451
Score = 29.1 bits (62), Expect = 3.7
Identities = 15/33 (45%), Positives = 16/33 (48%), Gaps = 1/33 (3%)
Frame = -2
Query: 162 CSFLVPDSRRHRAYGNRAHIVFASTGH-PTDTV 67
CSF VP H YGNR V H PTD +
Sbjct: 268 CSFSVPCDVEHPLYGNRHSPVMIPDSHTPTDGI 300
>At3g30670.1 68416.m03887 hypothetical protein
Length = 133
Score = 29.1 bits (62), Expect = 3.7
Identities = 15/43 (34%), Positives = 19/43 (44%)
Frame = +1
Query: 520 HFRAETSGTQSLANVRRQPQQTPPPIYQETIKDSPPSSPGNRT 648
H+R Q + QPQ+ P QET + PP SP T
Sbjct: 69 HYRNYPPPQQLFQHSTNQPQRVDPLPPQETAQQDPPLSPDPET 111
>At3g57420.1 68416.m06393 expressed protein contains Pfam domain
PF03385: Protein of unknown function, DUF288
Length = 765
Score = 28.3 bits (60), Expect = 6.5
Identities = 10/22 (45%), Positives = 15/22 (68%)
Frame = -2
Query: 105 IVFASTGHPTDTVGNIIKYKGW 40
IV + T HPT+ + ++K KGW
Sbjct: 112 IVVSVTKHPTEELKGLVKIKGW 133
>At1g02310.1 68414.m00176 glycosyl hydrolase family protein 5 /
cellulase family protein / (1-4)-beta-mannan
endohydrolase, putative similar to (1-4)-beta-mannan
endohydrolase precursor GI:9836826 from [Lycopersicon
esculentum]
Length = 411
Score = 28.3 bits (60), Expect = 6.5
Identities = 17/35 (48%), Positives = 21/35 (60%)
Frame = +1
Query: 292 YTGIERVVYSLGTSXNIIKPIISLINNFFCYITRK 396
+ G++ VVY G IK IISL+NNF Y RK
Sbjct: 109 FKGLDFVVYEAGRFN--IKLIISLVNNFEDYGGRK 141
>At1g62440.1 68414.m07044 leucine-rich repeat family protein /
extensin family protein similar to extensin-like protein
[Lycopersicon esculentum] gi|5917664|gb|AAD55979;
contains leucine-rich repeats, Pfam:PF00560; contains
proline rich extensin domains, INTERPRO:IPR002965
Length = 826
Score = 27.9 bits (59), Expect = 8.6
Identities = 10/22 (45%), Positives = 12/22 (54%)
Frame = +1
Query: 571 QPQQTPPPIYQETIKDSPPSSP 636
Q PPP+Y + SPP SP
Sbjct: 673 QSPPPPPPVYYPPVTQSPPPSP 694
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,425,077
Number of Sequences: 28952
Number of extensions: 327010
Number of successful extensions: 868
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 797
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 867
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1872844800
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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