Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1128
         (817 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ855498-1|ABH88185.1|  127|Tribolium castaneum chemosensory pro...    24   1.7  
DQ855497-1|ABH88184.1|  127|Tribolium castaneum chemosensory pro...    24   1.7  
AJ973445-1|CAJ01492.1|  127|Tribolium castaneum hypothetical pro...    24   1.7  
DQ855504-1|ABH88191.1|  124|Tribolium castaneum chemosensory pro...    23   3.8  
DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulati...    22   6.7  

>DQ855498-1|ABH88185.1|  127|Tribolium castaneum chemosensory
           protein 12 protein.
          Length = 127

 Score = 23.8 bits (49), Expect = 1.7
 Identities = 8/11 (72%), Positives = 10/11 (90%)
 Frame = -2

Query: 552 NCVLDK*KCSP 520
           NC+LD+ KCSP
Sbjct: 46  NCLLDRGKCSP 56


>DQ855497-1|ABH88184.1|  127|Tribolium castaneum chemosensory
           protein 11 protein.
          Length = 127

 Score = 23.8 bits (49), Expect = 1.7
 Identities = 11/20 (55%), Positives = 14/20 (70%), Gaps = 1/20 (5%)
 Frame = -2

Query: 552 NCVLDK*KCSPSNF-L*RHL 496
           NC+L+K KC+P    L RHL
Sbjct: 48  NCLLEKGKCTPDGAELKRHL 67


>AJ973445-1|CAJ01492.1|  127|Tribolium castaneum hypothetical
           protein protein.
          Length = 127

 Score = 23.8 bits (49), Expect = 1.7
 Identities = 8/11 (72%), Positives = 10/11 (90%)
 Frame = -2

Query: 552 NCVLDK*KCSP 520
           NC+LD+ KCSP
Sbjct: 46  NCLLDRGKCSP 56


>DQ855504-1|ABH88191.1|  124|Tribolium castaneum chemosensory
           protein 18 protein.
          Length = 124

 Score = 22.6 bits (46), Expect = 3.8
 Identities = 7/11 (63%), Positives = 10/11 (90%)
 Frame = -2

Query: 552 NCVLDK*KCSP 520
           NC+LDK +C+P
Sbjct: 43  NCLLDKGRCTP 53


>DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulation
           protein.
          Length = 947

 Score = 21.8 bits (44), Expect = 6.7
 Identities = 6/13 (46%), Positives = 9/13 (69%)
 Frame = +1

Query: 22  CICSSGVGTKRRT 60
           C+C+   GT+R T
Sbjct: 920 CVCAGSTGTRRAT 932


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 179,439
Number of Sequences: 336
Number of extensions: 3822
Number of successful extensions: 14
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 22310335
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)