Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1128
         (817 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_1410 + 33363784-33364086,33364221-33364280,33364388-333644...    69   6e-12
09_06_0260 - 21911358-21911438,21911715-21911828,21911911-219120...    66   2e-11
01_06_0610 - 30587269-30587717,30587996-30588212,30588363-305884...    62   7e-10
08_01_0889 + 8753877-8754236,8754995-8755054,8755174-8755250,875...    52   7e-07
07_01_0347 - 2509229-2509487,2509682-2509922,2510292-2510511,251...    36   0.039
03_06_0206 - 32353308-32353566,32353784-32354024,32354408-323546...    36   0.039
12_02_0453 + 19192060-19192301,19192477-19192559,19193246-191933...    33   0.27 
02_01_0030 - 183836-183903,183986-184453,184526-184604,184698-18...    32   0.63 
10_01_0090 + 1110035-1110350,1111032-1111039                           29   3.3  
01_01_0571 - 4233769-4234239,4234340-4234378,4234712-4234839,423...    29   3.3  
07_03_1344 - 25912639-25914060                                         29   4.4  
07_03_1704 + 28839628-28839908,28840010-28840123,28840416-288407...    29   5.8  
06_01_0895 + 6877386-6878475,6878577-6878838,6878932-6879017,687...    29   5.8  
06_01_0056 - 478424-478491,478587-478821,478916-478978,479102-47...    29   5.8  
10_08_0960 - 21853010-21853282,21854078-21854449,21854555-218548...    28   7.7  
09_04_0581 - 18684273-18685814,18686156-18686200,18686393-18686683     28   7.7  

>04_04_1410 +
           33363784-33364086,33364221-33364280,33364388-33364464,
           33365032-33365089,33365179-33365262,33365358-33365394,
           33365855-33365924,33366655-33366849,33366947-33367039,
           33367187-33367418,33367515-33367598,33368205-33368301,
           33368510-33368577,33368662-33368739,33368823-33368945,
           33369059-33369172,33369288-33369368
          Length = 617

 Score = 68.5 bits (160), Expect = 6e-12
 Identities = 31/74 (41%), Positives = 46/74 (62%), Gaps = 1/74 (1%)
 Frame = +3

Query: 27  LFFGCRYKEKDYHCREELEGMVGDGNLS-LYCAFSRDQEDKIYVQHKIFENRETIWRLLN 203
           LFFGCR +  DY   +EL+  + +G LS L  AFSR+   K YVQHK+ E    IW +++
Sbjct: 503 LFFGCRNRNMDYIYEDELQNFIQEGALSELIVAFSREGPAKEYVQHKMTEKATEIWNIVS 562

Query: 204 NNAHVFISGNAKSM 245
              ++++ G+AK M
Sbjct: 563 QGGYIYVCGDAKGM 576


>09_06_0260 -
           21911358-21911438,21911715-21911828,21911911-21912033,
           21912342-21912419,21912498-21912647,21913505-21913601,
           21913679-21913860,21913899-21913982,21914243-21914303,
           21914414-21914506,21914588-21914782,21914937-21915006,
           21915536-21915572,21915654-21915737,21915828-21915885,
           21916008-21916084,21916185-21916244,21916325-21916687
          Length = 668

 Score = 66.5 bits (155), Expect = 2e-11
 Identities = 31/74 (41%), Positives = 45/74 (60%), Gaps = 1/74 (1%)
 Frame = +3

Query: 27  LFFGCRYKEKDYHCREELEGMVGDGNLS-LYCAFSRDQEDKIYVQHKIFENRETIWRLLN 203
           LFFGCR ++ D+   +EL   V  G LS L  AFSR+   K YVQHK+ E    IW +++
Sbjct: 554 LFFGCRNRKMDFIYEDELNNFVETGALSELIVAFSREGPSKEYVQHKMAEKAPEIWSIIS 613

Query: 204 NNAHVFISGNAKSM 245
              ++++ G+AK M
Sbjct: 614 QGGYIYVCGDAKGM 627


>01_06_0610 -
           30587269-30587717,30587996-30588212,30588363-30588482,
           30589092-30589202,30589300-30589374,30589940-30590031,
           30590121-30590302,30590479-30590570,30591179-30591283,
           30591374-30591451,30591553-30591705
          Length = 557

 Score = 61.7 bits (143), Expect = 7e-10
 Identities = 30/80 (37%), Positives = 46/80 (57%), Gaps = 7/80 (8%)
 Frame = +3

Query: 30  FFGCRYKEKDY------HCREELEGMVGDGNLS-LYCAFSRDQEDKIYVQHKIFENRETI 188
           FFGCR +E D+      +     +G++   N    + AFSRDQ  K+YVQH+I E    +
Sbjct: 437 FFGCRNQENDFLYKDFWYAHAHDQGVLSSKNGGGFFVAFSRDQPQKVYVQHRIREQSARV 496

Query: 189 WRLLNNNAHVFISGNAKSMP 248
           W LL + A ++I+G++  MP
Sbjct: 497 WNLLKSGAAIYIAGSSTKMP 516


>08_01_0889 +
           8753877-8754236,8754995-8755054,8755174-8755250,
           8755481-8755622,8755736-8755772,8755852-8755921,
           8756021-8756212,8756321-8756413,8756545-8756773,
           8756861-8756944,8757041-8757192,8757279-8757375,
           8757576-8757725,8757813-8757890,8757982-8758104,
           8758169-8758315,8758418-8758472,8758807-8758874
          Length = 737

 Score = 51.6 bits (118), Expect = 7e-07
 Identities = 29/84 (34%), Positives = 45/84 (53%), Gaps = 12/84 (14%)
 Frame = +3

Query: 30  FFGCRYKEKDYHCREELEGMVGDGNLS-LYCAFSRDQEDKIYVQHKIFENR--------- 179
           FFGCR  + D+   +EL   + +G LS L  AFSR+   K YVQHK+ + R         
Sbjct: 599 FFGCRNSKMDFIYEDELNTFLEEGALSELVLAFSREGPTKEYVQHKMSQKRCSYFLPLSV 658

Query: 180 --ETIWRLLNNNAHVFISGNAKSM 245
               IW +++   ++++ G+AK M
Sbjct: 659 QASEIWDMISQGGYIYVCGDAKGM 682


>07_01_0347 -
           2509229-2509487,2509682-2509922,2510292-2510511,
           2510943-2511278,2512047-2512103,2512187-2512210
          Length = 378

 Score = 35.9 bits (79), Expect = 0.039
 Identities = 19/47 (40%), Positives = 29/47 (61%), Gaps = 4/47 (8%)
 Frame = +3

Query: 120 AFSRDQEDK----IYVQHKIFENRETIWRLLNNNAHVFISGNAKSMP 248
           A SR+Q++K    +YVQ KI E  + I++LL+  AH++  G    MP
Sbjct: 297 ALSREQKNKNGGKMYVQDKIEEYSDEIFKLLDGGAHIYFCGLKGMMP 343


>03_06_0206 -
           32353308-32353566,32353784-32354024,32354408-32354627,
           32354981-32355316,32355632-32355688,32355787-32355810
          Length = 378

 Score = 35.9 bits (79), Expect = 0.039
 Identities = 19/47 (40%), Positives = 29/47 (61%), Gaps = 4/47 (8%)
 Frame = +3

Query: 120 AFSRDQEDK----IYVQHKIFENRETIWRLLNNNAHVFISGNAKSMP 248
           A SR+Q++K    +YVQ KI E  + I++LL+  AH++  G    MP
Sbjct: 297 ALSREQKNKNAGKMYVQDKIEEYSDEIFKLLDGGAHIYFCGLKGMMP 343


>12_02_0453 +
           19192060-19192301,19192477-19192559,19193246-19193328,
           19193616-19193668,19194041-19194169,19194585-19194643,
           19195317-19195429,19195571-19195663,19195810-19195912,
           19196233-19196315,19196407-19196448
          Length = 360

 Score = 33.1 bits (72), Expect = 0.27
 Identities = 19/42 (45%), Positives = 27/42 (64%)
 Frame = -3

Query: 212 GVVVQQSPDRLAVLEYLVLDVDLIFLVSRKSAVQTQVPISHH 87
           G V+ + PDRL+   + V DVDL    S+  AV+T++PIS H
Sbjct: 312 GTVIARLPDRLST-GFAVADVDL----SKVEAVRTKMPISEH 348


>02_01_0030 -
           183836-183903,183986-184453,184526-184604,184698-185183
          Length = 366

 Score = 31.9 bits (69), Expect = 0.63
 Identities = 20/61 (32%), Positives = 34/61 (55%), Gaps = 7/61 (11%)
 Frame = +3

Query: 69  REELEGM--VGDGNLSLYCAFSRDQE----DKIYVQHKIFENRETIWRLL-NNNAHVFIS 227
           REE E M  +      L  A SR+Q     +K+Y+Q ++ E ++ +W LL  +N +V++ 
Sbjct: 265 REEFERMKEIAPERFRLDFAVSREQTNAAGEKMYIQTRMAEYKDELWELLKKDNTYVYMC 324

Query: 228 G 230
           G
Sbjct: 325 G 325


>10_01_0090 + 1110035-1110350,1111032-1111039
          Length = 107

 Score = 29.5 bits (63), Expect = 3.3
 Identities = 13/42 (30%), Positives = 22/42 (52%)
 Frame = +2

Query: 491 SDRWRYKKFDGEHFHLSRTQFESINHGDRSRSGWQYSRPTDA 616
           +D  R ++ +G H HL R + + + H D +  G + S P  A
Sbjct: 36  ADGRRLRRREGRHGHLLRHRHQQVRHRDPTGDGHESSSPAAA 77


>01_01_0571 - 4233769-4234239,4234340-4234378,4234712-4234839,
            4235329-4235470,4235519-4235905,4236045-4236230,
            4236382-4236659,4236757-4236883,4237270-4237442,
            4237610-4237657,4237734-4237767,4237837-4237965,
            4238865-4238960,4239419-4239485,4240030-4240085,
            4240522-4240617,4241127-4242222,4243221-4243402
          Length = 1244

 Score = 29.5 bits (63), Expect = 3.3
 Identities = 16/40 (40%), Positives = 21/40 (52%)
 Frame = +2

Query: 2    HSVQGHHASVLRVSVQREGLPLQGRVGGDGGRWELEFVLR 121
            H +    AS   V++Q     L+ R GGDGG  EL F+ R
Sbjct: 1108 HPLTKEFASHPHVTLQHMACMLKPRNGGDGGEKELTFLYR 1147


>07_03_1344 - 25912639-25914060
          Length = 473

 Score = 29.1 bits (62), Expect = 4.4
 Identities = 12/26 (46%), Positives = 15/26 (57%)
 Frame = +2

Query: 17 HHASVLRVSVQREGLPLQGRVGGDGG 94
          HHA+ LR++V R   P     GG GG
Sbjct: 20 HHAAALRLTVTRAAAPGSDATGGGGG 45


>07_03_1704 +
           28839628-28839908,28840010-28840123,28840416-28840769,
           28841072-28841268,28841496-28841587,28841700-28842027,
           28842328-28842535,28843555-28843669,28844023-28844190,
           28844804-28845476,28845552-28845758,28845911-28847001
          Length = 1275

 Score = 28.7 bits (61), Expect = 5.8
 Identities = 16/49 (32%), Positives = 26/49 (53%), Gaps = 2/49 (4%)
 Frame = -1

Query: 205 LFSSRQIVSRFSNILCWT*ILSSWSLEKAQYKL--KFPSPTIPSNSSLQ 65
           L  S +  S  + ILC    +  W++++   ++  K  SP +PSNSS Q
Sbjct: 537 LNGSEEEKSAAAKILCGASFVCGWNIQEYVVRMVVKLLSPPLPSNSSTQ 585


>06_01_0895 +
           6877386-6878475,6878577-6878838,6878932-6879017,
           6879117-6879274,6879554-6879630,6879719-6879785
          Length = 579

 Score = 28.7 bits (61), Expect = 5.8
 Identities = 9/38 (23%), Positives = 22/38 (57%)
 Frame = -3

Query: 209 VVVQQSPDRLAVLEYLVLDVDLIFLVSRKSAVQTQVPI 96
           ++ +Q PD    +  +V+D D++ L  R+  ++T+  +
Sbjct: 147 LITEQFPDTAGAIASIVVDADVVSLDGRRDMIETEAEV 184


>06_01_0056 -
           478424-478491,478587-478821,478916-478978,479102-479179,
           479263-479354,479788-479866,479971-480104,480184-480523
          Length = 362

 Score = 28.7 bits (61), Expect = 5.8
 Identities = 11/33 (33%), Positives = 23/33 (69%), Gaps = 1/33 (3%)
 Frame = +3

Query: 135 QEDKIYVQHKIFENRETIWRLL-NNNAHVFISG 230
           Q +K+Y+Q ++ E +E +W LL  ++ +V++ G
Sbjct: 289 QGEKMYIQTRMAEYKEELWELLKKDHTYVYMCG 321


>10_08_0960 -
           21853010-21853282,21854078-21854449,21854555-21854862,
           21854946-21855102
          Length = 369

 Score = 28.3 bits (60), Expect = 7.7
 Identities = 24/93 (25%), Positives = 41/93 (44%), Gaps = 5/93 (5%)
 Frame = +2

Query: 182 DDLATAEQQRPRVHIRQRQEHAGQLREALADV----IRVCSGTSAAASSDAVRTCRSKVD 349
           D+LAT   +      R  Q+H  +LR AL +V     R   G + AA++  +R   ++  
Sbjct: 135 DELATQFDRCKNEMARMFQDHTERLRRALGEVRRRHYRSLLGAAEAAAARRMREKEAEAS 194

Query: 350 SRSRPGDAWHSRWVASRT-SQGYQRRIKTEQFT 445
           + +R G     R    R  +  +Q +   +Q T
Sbjct: 195 NAARRGAELEERVARLRAEAAAWQAKALADQST 227


>09_04_0581 - 18684273-18685814,18686156-18686200,18686393-18686683
          Length = 625

 Score = 28.3 bits (60), Expect = 7.7
 Identities = 19/80 (23%), Positives = 34/80 (42%)
 Frame = +2

Query: 236 QEHAGQLREALADVIRVCSGTSAAASSDAVRTCRSKVDSRSRPGDAWHSRWVASRTSQGY 415
           + +  +L++AL       S    ++SS + R+ RS   S+  PG   H   V        
Sbjct: 346 EAYCSELKKALRLATSSTSNAQPSSSSMSRRSTRSIGASQELPGPVSHEAMVEGFLQIAS 405

Query: 416 QRRIKTEQFTGFYVLR*REP 475
           + R+  +QF    + +  EP
Sbjct: 406 EARLSVKQFCKALIQQVEEP 425


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,645,481
Number of Sequences: 37544
Number of extensions: 451517
Number of successful extensions: 1580
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 1519
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1575
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2232933960
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)