Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--1128
(817 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_20270| Best HMM Match : Flavodoxin_1 (HMM E-Value=3.1e-35) 59 5e-09
SB_25857| Best HMM Match : NAD_binding_1 (HMM E-Value=1.9e-07) 46 3e-05
SB_19884| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.5
SB_54546| Best HMM Match : zf-CCHC (HMM E-Value=0.0024) 30 2.6
SB_49364| Best HMM Match : zf-C3HC4 (HMM E-Value=0.0089) 29 3.4
SB_38805| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.4
SB_24359| Best HMM Match : zf-C3HC4 (HMM E-Value=0.013) 29 3.4
SB_23349| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.4
SB_14425| Best HMM Match : LRR_1 (HMM E-Value=3.3e-12) 29 3.4
SB_4811| Best HMM Match : zf-C3HC4 (HMM E-Value=0.013) 29 3.4
SB_56715| Best HMM Match : zf-C3HC4 (HMM E-Value=0.013) 29 3.4
SB_35672| Best HMM Match : zf-C3HC4 (HMM E-Value=0.013) 29 3.4
SB_29712| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 6.0
SB_1171| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.9
SB_57545| Best HMM Match : zf-C3HC4 (HMM E-Value=0.023) 28 7.9
SB_2375| Best HMM Match : Pentapeptide_2 (HMM E-Value=2.7) 28 7.9
>SB_20270| Best HMM Match : Flavodoxin_1 (HMM E-Value=3.1e-35)
Length = 724
Score = 58.8 bits (136), Expect = 5e-09
Identities = 37/86 (43%), Positives = 52/86 (60%), Gaps = 8/86 (9%)
Frame = +3
Query: 21 MHLFFGCRYKEKDYHCREELEGMVGDGNLS-LYCAFSRDQEDKI------YVQHKIFENR 179
M LFFGCR++EKD+ ++ELE V G LS L+ +FSRDQ + YVQ +
Sbjct: 600 MWLFFGCRHREKDFLYQKELESFVETGTLSRLFTSFSRDQGFTVSLSTPRYVQDNLKLQG 659
Query: 180 ETIWRL-LNNNAHVFISGNAKSMPDN 254
+ I L LN+ A V++ G+AK+M N
Sbjct: 660 DKIADLVLNDGAVVYVCGDAKNMASN 685
>SB_25857| Best HMM Match : NAD_binding_1 (HMM E-Value=1.9e-07)
Length = 166
Score = 46.4 bits (105), Expect = 3e-05
Identities = 22/38 (57%), Positives = 26/38 (68%), Gaps = 1/38 (2%)
Frame = +3
Query: 27 LFFGCRYKEKDYHCREELEGMVGDGNLS-LYCAFSRDQ 137
LFFGCR+K +DY ELE DG +S L+ AFSRDQ
Sbjct: 60 LFFGCRHKAQDYIYENELEDYAADGTISRLHVAFSRDQ 97
>SB_19884| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3486
Score = 30.7 bits (66), Expect = 1.5
Identities = 22/66 (33%), Positives = 30/66 (45%), Gaps = 8/66 (12%)
Frame = +2
Query: 164 DIREPRDDLATA----EQQRPRVHIRQRQEHAGQLREALADVIRVCSGTSAAAS----SD 319
D+ P D LA A + P H RQ +E Q +E L+ V+R+ S A +
Sbjct: 1031 DVSAPVDRLAGAALAISKAEPSAHARQEREFDAQAQELLSRVVRMSGSASKAVQHSGYAS 1090
Query: 320 AVRTCR 337
VRT R
Sbjct: 1091 KVRTVR 1096
>SB_54546| Best HMM Match : zf-CCHC (HMM E-Value=0.0024)
Length = 848
Score = 29.9 bits (64), Expect = 2.6
Identities = 15/50 (30%), Positives = 23/50 (46%), Gaps = 1/50 (2%)
Frame = -2
Query: 702 NKKIYSPTVNRTRTPSGSNDQNSRDSRRLASVGREYCQPD-RERSPWFMD 556
N+ + PT TRTP + + S D +V R C P+ + + W D
Sbjct: 266 NESLLKPTAKSTRTPQSNQEPGSNDENDSINVKRN-CDPEYYDSAQWESD 314
>SB_49364| Best HMM Match : zf-C3HC4 (HMM E-Value=0.0089)
Length = 828
Score = 29.5 bits (63), Expect = 3.4
Identities = 13/40 (32%), Positives = 19/40 (47%)
Frame = -2
Query: 702 NKKIYSPTVNRTRTPSGSNDQNSRDSRRLASVGREYCQPD 583
N+ + PT TRTP + + S D +V R C P+
Sbjct: 202 NESLLKPTAKSTRTPQSNQEPGSNDENDSINVKRN-CDPE 240
>SB_38805| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 390
Score = 29.5 bits (63), Expect = 3.4
Identities = 13/40 (32%), Positives = 19/40 (47%)
Frame = -2
Query: 702 NKKIYSPTVNRTRTPSGSNDQNSRDSRRLASVGREYCQPD 583
N+ + PT TRTP + + S D +V R C P+
Sbjct: 91 NESLLKPTAKSTRTPQSNQEPGSNDENDSINVKRN-CDPE 129
>SB_24359| Best HMM Match : zf-C3HC4 (HMM E-Value=0.013)
Length = 280
Score = 29.5 bits (63), Expect = 3.4
Identities = 13/40 (32%), Positives = 19/40 (47%)
Frame = -2
Query: 702 NKKIYSPTVNRTRTPSGSNDQNSRDSRRLASVGREYCQPD 583
N+ + PT TRTP + + S D +V R C P+
Sbjct: 194 NESLLKPTAKSTRTPQSNQEPGSNDENDSINVKRN-CDPE 232
>SB_23349| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 909
Score = 29.5 bits (63), Expect = 3.4
Identities = 13/40 (32%), Positives = 19/40 (47%)
Frame = -2
Query: 702 NKKIYSPTVNRTRTPSGSNDQNSRDSRRLASVGREYCQPD 583
N+ + PT TRTP + + S D +V R C P+
Sbjct: 208 NESLLKPTAKSTRTPQSNQEPGSNDENDSINVKRN-CDPE 246
>SB_14425| Best HMM Match : LRR_1 (HMM E-Value=3.3e-12)
Length = 1356
Score = 29.5 bits (63), Expect = 3.4
Identities = 13/40 (32%), Positives = 19/40 (47%)
Frame = -2
Query: 702 NKKIYSPTVNRTRTPSGSNDQNSRDSRRLASVGREYCQPD 583
N+ + PT TRTP + + S D +V R C P+
Sbjct: 26 NESLLKPTAKSTRTPQSNQEPGSNDENDSINVKRN-CDPE 64
>SB_4811| Best HMM Match : zf-C3HC4 (HMM E-Value=0.013)
Length = 538
Score = 29.5 bits (63), Expect = 3.4
Identities = 13/40 (32%), Positives = 19/40 (47%)
Frame = -2
Query: 702 NKKIYSPTVNRTRTPSGSNDQNSRDSRRLASVGREYCQPD 583
N+ + PT TRTP + + S D +V R C P+
Sbjct: 287 NESLLKPTAKSTRTPQSNQEPGSNDENDSINVKRN-CDPE 325
>SB_56715| Best HMM Match : zf-C3HC4 (HMM E-Value=0.013)
Length = 279
Score = 29.5 bits (63), Expect = 3.4
Identities = 13/40 (32%), Positives = 19/40 (47%)
Frame = -2
Query: 702 NKKIYSPTVNRTRTPSGSNDQNSRDSRRLASVGREYCQPD 583
N+ + PT TRTP + + S D +V R C P+
Sbjct: 105 NESLLKPTAKSTRTPQSNQEPGSNDENDSINVKRN-CDPE 143
>SB_35672| Best HMM Match : zf-C3HC4 (HMM E-Value=0.013)
Length = 257
Score = 29.5 bits (63), Expect = 3.4
Identities = 13/40 (32%), Positives = 19/40 (47%)
Frame = -2
Query: 702 NKKIYSPTVNRTRTPSGSNDQNSRDSRRLASVGREYCQPD 583
N+ + PT TRTP + + S D +V R C P+
Sbjct: 91 NESLLKPTAKSTRTPQSNQEPGSNDENDSINVKRN-CDPE 129
>SB_29712| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 52
Score = 28.7 bits (61), Expect = 6.0
Identities = 15/52 (28%), Positives = 30/52 (57%)
Frame = +3
Query: 102 NLSLYCAFSRDQEDKIYVQHKIFENRETIWRLLNNNAHVFISGNAKSMPDNC 257
N ++ + S+D+ DKI ++ K+F R+ R+L HVF++ + + + C
Sbjct: 1 NRNITASCSKDRSDKIKIREKLFGLRK---RILCQFGHVFVALHLRKIRALC 49
>SB_1171| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1415
Score = 28.3 bits (60), Expect = 7.9
Identities = 21/74 (28%), Positives = 34/74 (45%), Gaps = 4/74 (5%)
Frame = +2
Query: 332 CRSKVDSRSRPG--DAWHSRWVASRTSQGYQRRIKTEQFTGFYVLR*RE--PVVRISSDR 499
C + +SRPG D H R V++ +QGY R +Q+ Y + +E P VR +
Sbjct: 98 CDKPLGMKSRPGQVDLGHVRAVSAIATQGYMRDNFVKQYRMNYSIDGQEWKPYVRDGGSK 157
Query: 500 WRYKKFDGEHFHLS 541
+D + L+
Sbjct: 158 IFLANWDNDTIRLN 171
>SB_57545| Best HMM Match : zf-C3HC4 (HMM E-Value=0.023)
Length = 601
Score = 28.3 bits (60), Expect = 7.9
Identities = 13/40 (32%), Positives = 18/40 (45%)
Frame = -2
Query: 702 NKKIYSPTVNRTRTPSGSNDQNSRDSRRLASVGREYCQPD 583
N + PT TRTP + + S D +V R C P+
Sbjct: 302 NGSLLKPTAKSTRTPQSNQEPGSNDENDSINVKRN-CDPE 340
>SB_2375| Best HMM Match : Pentapeptide_2 (HMM E-Value=2.7)
Length = 521
Score = 28.3 bits (60), Expect = 7.9
Identities = 10/29 (34%), Positives = 18/29 (62%)
Frame = -1
Query: 676 ESNPDPQRLQRSE*SRLAKTRVGRTRVLP 590
+SNP+ S +R+ +TR+ +TR+ P
Sbjct: 423 KSNPNNSNTDNSSSARITRTRIAKTRITP 451
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,576,678
Number of Sequences: 59808
Number of extensions: 505378
Number of successful extensions: 1487
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 1341
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1486
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2275631710
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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