Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1128
         (817 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U21322-8|AAA62544.1|  662|Caenorhabditis elegans Abnormal embroy...    81   7e-16
AY079165-1|AAL86012.1|  585|Caenorhabditis elegans NADPH-depende...    61   1e-09
AL132858-12|CAB60480.1|  585|Caenorhabditis elegans Hypothetical...    61   1e-09
U28738-12|AAK68400.1|  189|Caenorhabditis elegans Sr protein (sp...    37   0.020
Z35595-6|CAA84637.1|  682|Caenorhabditis elegans Hypothetical pr...    32   0.43 
Z81518-1|CAB04214.3|  601|Caenorhabditis elegans Hypothetical pr...    31   1.3  
U56965-8|AAB52663.1|  314|Caenorhabditis elegans Hypothetical pr...    29   3.0  
AF400666-1|AAL28025.1|  481|Caenorhabditis elegans CUX-7 protein.      29   3.0  
AC024200-1|AAF35996.1|  196|Caenorhabditis elegans Hypothetical ...    29   3.0  
AC006605-6|AAK85446.2|  495|Caenorhabditis elegans Clk-2 upstrea...    29   3.0  
U53332-1|AAK31529.2|  580|Caenorhabditis elegans Hypothetical pr...    29   4.0  
DQ178637-1|ABD75716.1|  580|Caenorhabditis elegans F59G1.4 protein.    29   4.0  
Z81119-2|CAB03332.1|  350|Caenorhabditis elegans Hypothetical pr...    28   9.2  

>U21322-8|AAA62544.1|  662|Caenorhabditis elegans Abnormal
           embroygenesis protein 8 protein.
          Length = 662

 Score = 81.4 bits (192), Expect = 7e-16
 Identities = 40/83 (48%), Positives = 57/83 (68%), Gaps = 3/83 (3%)
 Frame = +3

Query: 6   ASKDI--MHLFFGCRYKEKDYHCREELEGMVGDGNLS-LYCAFSRDQEDKIYVQHKIFEN 176
           A K+I  MHL++GCR+ + DY  ++EL     D  L+ L CAFSR QE KIYVQ +++E 
Sbjct: 538 AGKEIGAMHLYYGCRHPDHDYIYKDELAKFQEDEVLTHLVCAFSRAQEHKIYVQDRLWET 597

Query: 177 RETIWRLLNNNAHVFISGNAKSM 245
           R+ IW  +N  AHV+I G+A++M
Sbjct: 598 RDRIWDAINVGAHVYICGDARNM 620


>AY079165-1|AAL86012.1|  585|Caenorhabditis elegans NADPH-dependent
           flavin reductase protein.
          Length = 585

 Score = 60.9 bits (141), Expect = 1e-09
 Identities = 33/75 (44%), Positives = 48/75 (64%), Gaps = 1/75 (1%)
 Frame = +3

Query: 27  LFFGCRYKEKDYHCREELEGMVGDGNLSLYCAFSRDQED-KIYVQHKIFENRETIWRLLN 203
           LFFGCR +  DY+  +E   + G   +++  AFSRD +  K+YVQHK+ EN   I R+L+
Sbjct: 483 LFFGCRSEHHDYYFSDEWPELSG---VAVIPAFSRDTDGRKVYVQHKMGENAGKIKRMLD 539

Query: 204 NNAHVFISGNAKSMP 248
             A VFI+G++  MP
Sbjct: 540 LGAQVFIAGSSGDMP 554


>AL132858-12|CAB60480.1|  585|Caenorhabditis elegans Hypothetical
           protein Y113G7A.8 protein.
          Length = 585

 Score = 60.9 bits (141), Expect = 1e-09
 Identities = 33/75 (44%), Positives = 48/75 (64%), Gaps = 1/75 (1%)
 Frame = +3

Query: 27  LFFGCRYKEKDYHCREELEGMVGDGNLSLYCAFSRDQED-KIYVQHKIFENRETIWRLLN 203
           LFFGCR +  DY+  +E   + G   +++  AFSRD +  K+YVQHK+ EN   I R+L+
Sbjct: 483 LFFGCRSEHHDYYFSDEWPELSG---VAVIPAFSRDTDGRKVYVQHKMGENAGKIKRMLD 539

Query: 204 NNAHVFISGNAKSMP 248
             A VFI+G++  MP
Sbjct: 540 LGAQVFIAGSSGDMP 554


>U28738-12|AAK68400.1|  189|Caenorhabditis elegans Sr protein
           (splicing factor) protein5, isoform c protein.
          Length = 189

 Score = 36.7 bits (81), Expect = 0.020
 Identities = 23/75 (30%), Positives = 37/75 (49%)
 Frame = -2

Query: 795 KYINI*YSMTPRH*HQYATRIVTSKQIYIYNNKKIYSPTVNRTRTPSGSNDQNSRDSRRL 616
           +YI+I +S +P   H Y   +   K+    +  +   P  +R+RT SGS  +N  D +R 
Sbjct: 106 QYISIHFSFSP---HSYQKPLFRLKEKREASRSRSPLPAKDRSRTRSGSPPKNGGDRKRS 162

Query: 615 ASVGREYCQPDRERS 571
            S GR + +    RS
Sbjct: 163 VSRGRSHSRDGSNRS 177


>Z35595-6|CAA84637.1|  682|Caenorhabditis elegans Hypothetical
           protein C01G6.6a protein.
          Length = 682

 Score = 32.3 bits (70), Expect = 0.43
 Identities = 21/74 (28%), Positives = 36/74 (48%), Gaps = 1/74 (1%)
 Frame = +3

Query: 27  LFFGCRYKEKDYHCREELEGMVGDGNLS-LYCAFSRDQEDKIYVQHKIFENRETIWRLLN 203
           LFFGCR    D     ELE  V +G L+ L    S  + +++    + + ++   +   +
Sbjct: 567 LFFGCRDSSVDAIYMSELEMFVSEGILTDLIICESEQKGERVQDGLRKYLDKVLPFLTAS 626

Query: 204 NNAHVFISGNAKSM 245
             + +FI G+AK M
Sbjct: 627 TESKIFICGDAKGM 640


>Z81518-1|CAB04214.3|  601|Caenorhabditis elegans Hypothetical
           protein F28D9.1 protein.
          Length = 601

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 15/35 (42%), Positives = 19/35 (54%)
 Frame = -2

Query: 672 RTRTPSGSNDQNSRDSRRLASVGREYCQPDRERSP 568
           R R+PSGS  ++ R  R  A+  R    P R RSP
Sbjct: 466 RRRSPSGSKSRSPRRRRSPAAAPRRRQSPQRRRSP 500


>U56965-8|AAB52663.1|  314|Caenorhabditis elegans Hypothetical
           protein C15H9.3 protein.
          Length = 314

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 10/28 (35%), Positives = 19/28 (67%)
 Frame = +3

Query: 465 RGSPWSAYRATDGVIKNSMVNIFICRER 548
           RGS   AY  +   ++N++VN+ +CR++
Sbjct: 286 RGSKCLAYMVSGSALRNAIVNLILCRKK 313


>AF400666-1|AAL28025.1|  481|Caenorhabditis elegans CUX-7 protein.
          Length = 481

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 22/80 (27%), Positives = 34/80 (42%)
 Frame = +2

Query: 173 EPRDDLATAEQQRPRVHIRQRQEHAGQLREALADVIRVCSGTSAAASSDAVRTCRSKVDS 352
           E  D L  A  Q+  + +R+R +   +   A  D  R  + TS    ++   T  S  + 
Sbjct: 399 EQEDALRQALLQQREIRMRERLKEKMKASGAEKDKKRDKNKTSRRRRTNRHDTSSSSSED 458

Query: 353 RSRPGDAWHSRWVASRTSQG 412
              P D+ HSR    R S+G
Sbjct: 459 SDSPSDSPHSRRQRKRQSEG 478


>AC024200-1|AAF35996.1|  196|Caenorhabditis elegans Hypothetical
           protein Y71F9AL.11 protein.
          Length = 196

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 22/73 (30%), Positives = 35/73 (47%), Gaps = 2/73 (2%)
 Frame = -2

Query: 498 LSLDMRTTGSLYLNT*NPVNCSVLIRRW*PC--EVRDATHLECQASPGLDLESTLLLQVR 325
           LSL +  + SL L+  + + CS+ +R   P   + RD  H+   + P L L   L     
Sbjct: 55  LSLSLSLSLSLSLSHLSSIQCSIRVRVHSPVPRDPRDRLHVSA-SPPRLALSPPLNFSAP 113

Query: 324 TASLLAAALVPEH 286
           + SL+A   + EH
Sbjct: 114 SVSLVAGRRINEH 126


>AC006605-6|AAK85446.2|  495|Caenorhabditis elegans Clk-2 upstream,
           human gene xe7related protein 7 protein.
          Length = 495

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 22/80 (27%), Positives = 34/80 (42%)
 Frame = +2

Query: 173 EPRDDLATAEQQRPRVHIRQRQEHAGQLREALADVIRVCSGTSAAASSDAVRTCRSKVDS 352
           E  D L  A  Q+  + +R+R +   +   A  D  R  + TS    ++   T  S  + 
Sbjct: 399 EQEDALRQALLQQREIRMRERLKEKMKASGAEKDKKRDKNKTSRRRRTNRHDTSSSSSED 458

Query: 353 RSRPGDAWHSRWVASRTSQG 412
              P D+ HSR    R S+G
Sbjct: 459 SDSPSDSPHSRRQRKRQSEG 478


>U53332-1|AAK31529.2|  580|Caenorhabditis elegans Hypothetical
           protein F59G1.4 protein.
          Length = 580

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 19/57 (33%), Positives = 29/57 (50%), Gaps = 4/57 (7%)
 Frame = -3

Query: 527 VHHRIFYNAICRSICGPRAPSTSTHRIQ*IVQF*SVVG----NLVKSAMLPIWSARH 369
           VHH+IF   +   + G R PST+  ++   VQ  S+       L++S ML  W+  H
Sbjct: 151 VHHKIFLPCLIAVLRGKRIPSTTHDQLIACVQKMSIRATCQKELIQSGMLE-WAVNH 206


>DQ178637-1|ABD75716.1|  580|Caenorhabditis elegans F59G1.4 protein.
          Length = 580

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 19/57 (33%), Positives = 29/57 (50%), Gaps = 4/57 (7%)
 Frame = -3

Query: 527 VHHRIFYNAICRSICGPRAPSTSTHRIQ*IVQF*SVVG----NLVKSAMLPIWSARH 369
           VHH+IF   +   + G R PST+  ++   VQ  S+       L++S ML  W+  H
Sbjct: 151 VHHKIFLPCLIAVLRGKRIPSTTHDQLIACVQKMSIRATCQKELIQSGMLE-WAVNH 206


>Z81119-2|CAB03332.1|  350|Caenorhabditis elegans Hypothetical
           protein T10H4.3 protein.
          Length = 350

 Score = 27.9 bits (59), Expect = 9.2
 Identities = 15/49 (30%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
 Frame = +3

Query: 81  EGMVGDGNLSLYCAFSRDQEDKIYVQHK-IFENRETIWRLLNNNAHVFI 224
           EG+VG   + +YC F  +  DK ++ +     N     R LN+ +H+F+
Sbjct: 261 EGLVGFNGVVMYCTFVVEVWDKKWIIYAGAASNLIVNLRALNSLSHLFV 309


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,708,574
Number of Sequences: 27780
Number of extensions: 362515
Number of successful extensions: 1045
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 989
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1042
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 2008899418
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)