Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1128
         (817 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    37   3e-04
AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.     25   0.84 
AF388659-3|AAK71993.1|  548|Apis mellifera 1D-myo-inositol-trisp...    25   1.1  
DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chlor...    23   3.4  
DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chlor...    23   3.4  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    22   5.9  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    22   5.9  

>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
            protein.
          Length = 1143

 Score = 36.7 bits (81), Expect = 3e-04
 Identities = 27/78 (34%), Positives = 38/78 (48%), Gaps = 3/78 (3%)
 Frame = +3

Query: 27   LFFGCRYKEKDYHCREELEGMVGDGNL-SLYCAFSRDQE-DKIYVQHKIFENRETIW-RL 197
            LFFGCR +  D + R+E E MV  G L  ++ A SR+    K YVQ  I      I+  L
Sbjct: 1004 LFFGCRQRNLDLY-RQEKEEMVELGVLDKIFLALSRESGFKKTYVQDLIQAEASQIYDML 1062

Query: 198  LNNNAHVFISGNAKSMPD 251
            +    H ++ G+     D
Sbjct: 1063 VYEGGHFYVCGDCTMAED 1080


>AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.
          Length = 602

 Score = 25.0 bits (52), Expect = 0.84
 Identities = 10/28 (35%), Positives = 19/28 (67%)
 Frame = -3

Query: 527 VHHRIFYNAICRSICGPRAPSTSTHRIQ 444
           + +R++  A+ +S   P+ PSTS+H +Q
Sbjct: 424 MEYRLYNPALIQSQPSPQYPSTSSHILQ 451


>AF388659-3|AAK71993.1|  548|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform C protein.
          Length = 548

 Score = 24.6 bits (51), Expect = 1.1
 Identities = 11/38 (28%), Positives = 19/38 (50%)
 Frame = -2

Query: 687 SPTVNRTRTPSGSNDQNSRDSRRLASVGREYCQPDRER 574
           SP+ +R+ +PS    Q  +D  +  S    +C  D E+
Sbjct: 37  SPSSSRSPSPSLLTSQPHQDHNKEKSKNNHHCNQDTEK 74


>DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 23.0 bits (47), Expect = 3.4
 Identities = 11/34 (32%), Positives = 18/34 (52%)
 Frame = -3

Query: 587 LTVNDRRGLWIQTAFSTNENVHHRIFYNAICRSI 486
           LT+ D   +W+   F +NE   H  F+N I  ++
Sbjct: 107 LTLTDASRVWMPDLFFSNEKEGH--FHNIIMPNV 138


>DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 23.0 bits (47), Expect = 3.4
 Identities = 11/34 (32%), Positives = 18/34 (52%)
 Frame = -3

Query: 587 LTVNDRRGLWIQTAFSTNENVHHRIFYNAICRSI 486
           LT+ D   +W+   F +NE   H  F+N I  ++
Sbjct: 107 LTLTDASRVWMPDLFFSNEKEGH--FHNIIMPNV 138


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 22.2 bits (45), Expect = 5.9
 Identities = 12/34 (35%), Positives = 14/34 (41%)
 Frame = -2

Query: 690 YSPTVNRTRTPSGSNDQNSRDSRRLASVGREYCQ 589
           Y  TV R  TP G   Q    S   +  G  +CQ
Sbjct: 855 YRVTVKREVTPDGVIAQLQISSAEASDSGAYFCQ 888


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 22.2 bits (45), Expect = 5.9
 Identities = 12/34 (35%), Positives = 14/34 (41%)
 Frame = -2

Query: 690 YSPTVNRTRTPSGSNDQNSRDSRRLASVGREYCQ 589
           Y  TV R  TP G   Q    S   +  G  +CQ
Sbjct: 851 YRVTVKREVTPDGVIAQLQISSAEASDSGAYFCQ 884


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 219,628
Number of Sequences: 438
Number of extensions: 4939
Number of successful extensions: 16
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25974678
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)