Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--1128
(817 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g30210.2 68417.m04297 NADPH-cytochrome p450 reductase, putati... 67 2e-11
At4g30210.1 68417.m04296 NADPH-cytochrome p450 reductase, putati... 67 2e-11
At3g02280.1 68416.m00209 flavodoxin family protein low similarit... 66 2e-11
At4g24520.1 68417.m03515 NADPH-cytochrome p450 reductase, putati... 66 3e-11
At4g05390.1 68417.m00821 ferredoxin--NADP(+) reductase, putative... 37 0.014
At1g30510.3 68414.m03730 ferredoxin--NADP(+) reductase, putative... 37 0.014
At1g30510.2 68414.m03732 ferredoxin--NADP(+) reductase, putative... 37 0.014
At1g30510.1 68414.m03731 ferredoxin--NADP(+) reductase, putative... 37 0.014
At1g60200.1 68414.m06781 splicing factor PWI domain-containing p... 34 0.098
At1g72670.1 68414.m08404 calmodulin-binding family protein low s... 32 0.52
At3g51640.1 68416.m05663 expressed protein 31 0.69
At5g66190.1 68418.m08338 ferredoxin--NADP(+) reductase, putative... 30 1.6
At5g10350.2 68418.m01201 polyadenylate-binding protein family pr... 30 2.1
At5g10350.1 68418.m01200 polyadenylate-binding protein family pr... 30 2.1
At1g30560.1 68414.m03739 transporter, putative similar to glycer... 30 2.1
At3g15354.1 68416.m01939 WD-40 repeat family protein / phytochro... 29 3.7
At1g21760.1 68414.m02724 F-box family protein Contains PF|00646 ... 29 4.9
At5g19650.1 68418.m02338 ovate protein, putative 84% similar to ... 28 6.4
At2g19640.2 68415.m02295 SET domain-containing protein contains ... 28 6.4
At2g19640.1 68415.m02294 SET domain-containing protein contains ... 28 6.4
At5g17690.1 68418.m02073 like heterochromatin protein (LHP1) ide... 28 8.5
At3g55760.2 68416.m06196 expressed protein 28 8.5
At3g55760.1 68416.m06195 expressed protein 28 8.5
At3g20840.1 68416.m02635 ovule development protein, putative sim... 28 8.5
At1g34650.1 68414.m04309 homeobox-leucine zipper family protein ... 28 8.5
>At4g30210.2 68417.m04297 NADPH-cytochrome p450 reductase, putative
/ NADPH-ferrihemoprotein reductase, putative similar to
NADPH-cytochrome P450 oxydoreductase from [Populus
balsamifera subsp. trichocarpa x Populus deltoides]
GI:13183564, GI:13183566
Length = 711
Score = 66.9 bits (156), Expect = 2e-11
Identities = 31/74 (41%), Positives = 46/74 (62%), Gaps = 1/74 (1%)
Frame = +3
Query: 27 LFFGCRYKEKDYHCREELEGMVGDGNLS-LYCAFSRDQEDKIYVQHKIFENRETIWRLLN 203
LFFGCR + D+ EEL+ V G L+ L AFSR+ K YVQHK+ + IW +++
Sbjct: 597 LFFGCRNRRMDFIYEEELQRFVESGALAELSVAFSREGPTKEYVQHKMMDKASDIWNMIS 656
Query: 204 NNAHVFISGNAKSM 245
A++++ G+AK M
Sbjct: 657 QGAYLYVCGDAKGM 670
>At4g30210.1 68417.m04296 NADPH-cytochrome p450 reductase, putative
/ NADPH-ferrihemoprotein reductase, putative similar to
NADPH-cytochrome P450 oxydoreductase from [Populus
balsamifera subsp. trichocarpa x Populus deltoides]
GI:13183564, GI:13183566
Length = 726
Score = 66.9 bits (156), Expect = 2e-11
Identities = 31/74 (41%), Positives = 46/74 (62%), Gaps = 1/74 (1%)
Frame = +3
Query: 27 LFFGCRYKEKDYHCREELEGMVGDGNLS-LYCAFSRDQEDKIYVQHKIFENRETIWRLLN 203
LFFGCR + D+ EEL+ V G L+ L AFSR+ K YVQHK+ + IW +++
Sbjct: 597 LFFGCRNRRMDFIYEEELQRFVESGALAELSVAFSREGPTKEYVQHKMMDKASDIWNMIS 656
Query: 204 NNAHVFISGNAKSM 245
A++++ G+AK M
Sbjct: 657 QGAYLYVCGDAKGM 670
>At3g02280.1 68416.m00209 flavodoxin family protein low similarity
to SP|Q05001 NADPH-cytochrome P450 reductase (EC
1.6.2.4) {Catharanthus roseus}, similar to
NADPH-dependent FMN and FAD containing oxidoreductase
[Homo sapiens] GI:6694369; contains Pfam profiles
PF00258: flavodoxin, PF00667: FAD binding domain,
PF00175: Oxidoreductase NAD-binding domain
Length = 623
Score = 66.5 bits (155), Expect = 2e-11
Identities = 35/80 (43%), Positives = 49/80 (61%), Gaps = 7/80 (8%)
Frame = +3
Query: 30 FFGCRYKEKDYHCREELE------GMVGDGNLS-LYCAFSRDQEDKIYVQHKIFENRETI 188
FFGCR K+ D+ R+ E GM+ +G Y AFSRDQ K+YVQHKI E + +
Sbjct: 502 FFGCRNKDTDFLYRDFWESHAREGGMLSEGKGGGFYTAFSRDQPKKVYVQHKIREMSKRV 561
Query: 189 WRLLNNNAHVFISGNAKSMP 248
W LL + A V+++G++ MP
Sbjct: 562 WDLLCDGAAVYVAGSSTKMP 581
>At4g24520.1 68417.m03515 NADPH-cytochrome p450 reductase, putative
/ NADPH-ferrihemoprotein reductase, putative similar to
NADPH-ferrihemoprotein reductase NADPH-cytochrome P450
oxydoreductase isoform 1 [Populus balsamifera subsp.
trichocarpa x Populus deltoides] GI:13183562, SP|P37116
NADPH-cytochrome P450 reductase (EC 1.6.2.4) (CPR)
[Vigna radiata] {Phaseolus aureus}
Length = 692
Score = 66.1 bits (154), Expect = 3e-11
Identities = 30/74 (40%), Positives = 44/74 (59%), Gaps = 1/74 (1%)
Frame = +3
Query: 27 LFFGCRYKEKDYHCREELEGMVGDGNLS-LYCAFSRDQEDKIYVQHKIFENRETIWRLLN 203
LFFGCR ++ D+ +EL V G +S L AFSR+ K YVQHK+ E +W L+
Sbjct: 578 LFFGCRNRQMDFIYEDELNNFVDQGVISELIMAFSREGAQKEYVQHKMMEKAAQVWDLIK 637
Query: 204 NNAHVFISGNAKSM 245
++++ G+AK M
Sbjct: 638 EEGYLYVCGDAKGM 651
>At4g05390.1 68417.m00821 ferredoxin--NADP(+) reductase, putative /
adrenodoxin reductase, putative strong similarity to
SP|P41345 Ferredoxin--NADP reductase, root isozyme,
chloroplast precursor (EC 1.18.1.2) (FNR) {Oryza
sativa}, ferredoxin-NADP reductase precursor [Zea mays]
GI:500751
Length = 378
Score = 37.1 bits (82), Expect = 0.014
Identities = 19/47 (40%), Positives = 30/47 (63%), Gaps = 4/47 (8%)
Frame = +3
Query: 120 AFSRDQEDK----IYVQHKIFENRETIWRLLNNNAHVFISGNAKSMP 248
A SR++++K +YVQ KI E + I++LL+N AH++ G MP
Sbjct: 297 ALSREEKNKKGGKMYVQDKIEEYSDEIFKLLDNGAHIYFCGLKGMMP 343
>At1g30510.3 68414.m03730 ferredoxin--NADP(+) reductase, putative /
adrenodoxin reductase, putative strong similarity to
SP|P41345 Ferredoxin--NADP reductase, root isozyme,
chloroplast precursor (EC 1.18.1.2) (FNR) {Oryza
sativa}, ferredoxin-NADP reductase precursor [Zea mays]
GI:500751
Length = 317
Score = 37.1 bits (82), Expect = 0.014
Identities = 19/47 (40%), Positives = 30/47 (63%), Gaps = 4/47 (8%)
Frame = +3
Query: 120 AFSRDQEDK----IYVQHKIFENRETIWRLLNNNAHVFISGNAKSMP 248
A SR++++K +YVQ KI E + I++LL+N AH++ G MP
Sbjct: 236 ALSREEKNKKGGKMYVQDKIEEYSDEIFKLLDNGAHIYFCGLKGMMP 282
>At1g30510.2 68414.m03732 ferredoxin--NADP(+) reductase, putative /
adrenodoxin reductase, putative strong similarity to
SP|P41345 Ferredoxin--NADP reductase, root isozyme,
chloroplast precursor (EC 1.18.1.2) (FNR) {Oryza
sativa}, ferredoxin-NADP reductase precursor [Zea mays]
GI:500751
Length = 382
Score = 37.1 bits (82), Expect = 0.014
Identities = 19/47 (40%), Positives = 30/47 (63%), Gaps = 4/47 (8%)
Frame = +3
Query: 120 AFSRDQEDK----IYVQHKIFENRETIWRLLNNNAHVFISGNAKSMP 248
A SR++++K +YVQ KI E + I++LL+N AH++ G MP
Sbjct: 301 ALSREEKNKKGGKMYVQDKIEEYSDEIFKLLDNGAHIYFCGLKGMMP 347
>At1g30510.1 68414.m03731 ferredoxin--NADP(+) reductase, putative /
adrenodoxin reductase, putative strong similarity to
SP|P41345 Ferredoxin--NADP reductase, root isozyme,
chloroplast precursor (EC 1.18.1.2) (FNR) {Oryza
sativa}, ferredoxin-NADP reductase precursor [Zea mays]
GI:500751
Length = 381
Score = 37.1 bits (82), Expect = 0.014
Identities = 19/47 (40%), Positives = 30/47 (63%), Gaps = 4/47 (8%)
Frame = +3
Query: 120 AFSRDQEDK----IYVQHKIFENRETIWRLLNNNAHVFISGNAKSMP 248
A SR++++K +YVQ KI E + I++LL+N AH++ G MP
Sbjct: 300 ALSREEKNKKGGKMYVQDKIEEYSDEIFKLLDNGAHIYFCGLKGMMP 346
>At1g60200.1 68414.m06781 splicing factor PWI domain-containing
protein / RNA recognition motif (RRM)-containing protein
contains Pfam profiles PF01480: PWI domain, PF00076: RNA
recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 899
Score = 34.3 bits (75), Expect = 0.098
Identities = 21/71 (29%), Positives = 35/71 (49%)
Frame = +2
Query: 146 DLRPAQDIREPRDDLATAEQQRPRVHIRQRQEHAGQLREALADVIRVCSGTSAAASSDAV 325
D R + +RE DDLA ++ V +R L++ D +R+ SG AA S+ V
Sbjct: 536 DERRRRQLREKEDDLADRLKEEEEVAEAKRSAEEQNLQQQQLDALRILSG-QAAIGSETV 594
Query: 326 RTCRSKVDSRS 358
+T + D ++
Sbjct: 595 QTSPIENDHKA 605
>At1g72670.1 68414.m08404 calmodulin-binding family protein low
similarity to SF16 protein [Helianthus annuus]
GI:560150; contains Pfam profile PF00612: IQ
calmodulin-binding motif
Length = 414
Score = 31.9 bits (69), Expect = 0.52
Identities = 20/70 (28%), Positives = 33/70 (47%), Gaps = 4/70 (5%)
Frame = +2
Query: 215 RVHIRQRQEHAGQLREALADVI----RVCSGTSAAASSDAVRTCRSKVDSRSRPGDAWHS 382
R ++ RQE A + A+ + R C + A+ +V+ ++ +S PG W
Sbjct: 195 RTKLQMRQEGAIKRERAMVYALTHQPRTCPSPAKASKQGSVK--KNNGSCKSSPGWNWLD 252
Query: 383 RWVASRTSQG 412
RWVA R +G
Sbjct: 253 RWVADRPWEG 262
>At3g51640.1 68416.m05663 expressed protein
Length = 826
Score = 31.5 bits (68), Expect = 0.69
Identities = 38/165 (23%), Positives = 65/165 (39%), Gaps = 2/165 (1%)
Frame = +2
Query: 152 RPAQDIREPR--DDLATAEQQRPRVHIRQRQEHAGQLREALADVIRVCSGTSAAASSDAV 325
R A++ R+ R + + E+++ R + + E +LR+ + + + CS S AA
Sbjct: 257 RKAEEKRQARLEKEHSEEEERKQREEVARLVEERRRLRDEILEAEK-CSKLSVAAKEKDT 315
Query: 326 RTCRSKVDSRSRPGDAWHSRWVASRTSQGYQRRIKTEQFTGFYVLR*REPVVRISSDRWR 505
+ K R + D S+ + + R +TEQ G Y E R + D R
Sbjct: 316 KEAEKKRQERRKERDRASSKSNSDGEEVDKRTRKETEQKRGLYKSDHLEQ-ERHAPDNLR 374
Query: 506 YKKFDGEHFHLSRTQFESINHGDRSRSGWQYSRPTDASLRESRLF 640
+ H H S +G +S G + R L S+ F
Sbjct: 375 VPNMERRHGHGLENNVTS--NGTKS-GGRYFDRMKGTFLSSSKAF 416
>At5g66190.1 68418.m08338 ferredoxin--NADP(+) reductase, putative /
adrenodoxin reductase, putative strong similarity to
Ferredoxin--NADP reductase, chloroplast precursor (EC
1.18.1.2) (FNR) from {Pisum sativum} SP|P10933,
{Mesembryanthemum crystallinum} SP|P41343, {Spinacia
oleracea} SP|P00455; identical to cDNA ferredoxin-NADP+
reductase precursor (petH) GI:5730138
Length = 360
Score = 30.3 bits (65), Expect = 1.6
Identities = 21/61 (34%), Positives = 32/61 (52%), Gaps = 7/61 (11%)
Frame = +3
Query: 69 REELEGMV--GDGNLSLYCAFSRDQE----DKIYVQHKIFENRETIWRLL-NNNAHVFIS 227
+EE E M N L A SR+Q +K+Y+Q ++ E E +W LL +N V++
Sbjct: 259 KEEFEKMKEKNPDNFRLDFAVSREQTNEKGEKMYIQTRMAEYAEELWELLKKDNTFVYMC 318
Query: 228 G 230
G
Sbjct: 319 G 319
>At5g10350.2 68418.m01201 polyadenylate-binding protein family
protein / PABP family protein contains weak similarity
to poly(A) binding protein II from [Mus musculus]
GI:2351846, [Xenopus laevis] GI:11527140; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 202
Score = 29.9 bits (64), Expect = 2.1
Identities = 18/59 (30%), Positives = 29/59 (49%)
Frame = +2
Query: 182 DDLATAEQQRPRVHIRQRQEHAGQLREALADVIRVCSGTSAAASSDAVRTCRSKVDSRS 358
D+ A E + +++ +E A LRE A V + T AS A + + +VD+RS
Sbjct: 32 DEDAVTELAEMKRRLKEMEEEAAALREMQAKVEKEMGATQDPASMAANQEGKEEVDARS 90
>At5g10350.1 68418.m01200 polyadenylate-binding protein family
protein / PABP family protein contains weak similarity
to poly(A) binding protein II from [Mus musculus]
GI:2351846, [Xenopus laevis] GI:11527140; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 217
Score = 29.9 bits (64), Expect = 2.1
Identities = 18/59 (30%), Positives = 29/59 (49%)
Frame = +2
Query: 182 DDLATAEQQRPRVHIRQRQEHAGQLREALADVIRVCSGTSAAASSDAVRTCRSKVDSRS 358
D+ A E + +++ +E A LRE A V + T AS A + + +VD+RS
Sbjct: 32 DEDAVTELAEMKRRLKEMEEEAAALREMQAKVEKEMGATQDPASMAANQEGKEEVDARS 90
>At1g30560.1 68414.m03739 transporter, putative similar to
glycerol-3-phosphate transporter (glycerol 3-phosphate
permease) [Homo sapiens] GI:7543982
Length = 510
Score = 29.9 bits (64), Expect = 2.1
Identities = 14/29 (48%), Positives = 19/29 (65%)
Frame = +2
Query: 338 SKVDSRSRPGDAWHSRWVASRTSQGYQRR 424
S+VDS R GD +++SRTS G+ RR
Sbjct: 249 SEVDSTMRLGDTITESFLSSRTSTGFDRR 277
>At3g15354.1 68416.m01939 WD-40 repeat family protein / phytochrome
A-related contains 7 WD-40 repeats (PF00400);
phytochrome A supressor spa1 (GI:4809171) [Arabidopsis
thaliana]
Length = 837
Score = 29.1 bits (62), Expect = 3.7
Identities = 23/73 (31%), Positives = 34/73 (46%)
Frame = +2
Query: 131 RPGR*DLRPAQDIREPRDDLATAEQQRPRVHIRQRQEHAGQLREALADVIRVCSGTSAAA 310
RP DL ++ I EPRD+L E++ + +R R E L E L +I+ SA
Sbjct: 285 RPSMSDLLQSEFITEPRDNL---EEREAAIELRDRIEEQESLLEFLL-LIQQRKQESAYR 340
Query: 311 SSDAVRTCRSKVD 349
D V S ++
Sbjct: 341 LQDTVSLLSSDIE 353
>At1g21760.1 68414.m02724 F-box family protein Contains PF|00646
F-box domain. ESTs gb|Z37267, gb|R90412, gb|Z37268 and
gb|T88189 come from this gene similar to SKP1
interacting partner 2 (SKIP2) TIGR_Ath1:At5g67250
Length = 328
Score = 28.7 bits (61), Expect = 4.9
Identities = 17/52 (32%), Positives = 28/52 (53%), Gaps = 2/52 (3%)
Frame = -1
Query: 535 MKMFTIEFFIT--PSVARYADHGLPLPQHIESSELFSFDPSLVTL*SPRCYP 386
+++ T+++FIT P + Y H P+P +S FDP+L+ RC P
Sbjct: 16 LRLRTVQYFITKRPWLDLYGVHVRPVPPFGSTSRKPHFDPALI----HRCLP 63
>At5g19650.1 68418.m02338 ovate protein, putative 84% similar to
ovate protein (GI:23429649) [Lycopersicon esculentum];
contains TIGRFAM TIGR01568 : uncharacterized
plant-specific domain TIGR01568
Length = 221
Score = 28.3 bits (60), Expect = 6.4
Identities = 13/33 (39%), Positives = 19/33 (57%)
Frame = +2
Query: 266 LADVIRVCSGTSAAASSDAVRTCRSKVDSRSRP 364
L DV+ C+ TS A SS+ ++K + SRP
Sbjct: 25 LYDVVETCAVTSKATSSERFFVTKAKTKTPSRP 57
>At2g19640.2 68415.m02295 SET domain-containing protein contains
Pfam profile PF00856: SET domain
Length = 398
Score = 28.3 bits (60), Expect = 6.4
Identities = 19/64 (29%), Positives = 30/64 (46%)
Frame = -1
Query: 550 LRSRQMKMFTIEFFITPSVARYADHGLPLPQHIESSELFSFDPSLVTL*SPRCYPSGVPG 371
LR + +++ F++ SV+ Y DH L + S SLV+ SP C+ S P
Sbjct: 38 LRESPLLLYSAFPFLSSSVSPYCDHCFRLLASSAHQKCQSC--SLVSFCSPNCFASHTPW 95
Query: 370 ITRS 359
+ S
Sbjct: 96 LCES 99
>At2g19640.1 68415.m02294 SET domain-containing protein contains
Pfam profile PF00856: SET domain
Length = 341
Score = 28.3 bits (60), Expect = 6.4
Identities = 19/64 (29%), Positives = 30/64 (46%)
Frame = -1
Query: 550 LRSRQMKMFTIEFFITPSVARYADHGLPLPQHIESSELFSFDPSLVTL*SPRCYPSGVPG 371
LR + +++ F++ SV+ Y DH L + S SLV+ SP C+ S P
Sbjct: 38 LRESPLLLYSAFPFLSSSVSPYCDHCFRLLASSAHQKCQSC--SLVSFCSPNCFASHTPW 95
Query: 370 ITRS 359
+ S
Sbjct: 96 LCES 99
>At5g17690.1 68418.m02073 like heterochromatin protein (LHP1)
identical to like heterochromatin protein LHP1
[Arabidopsis thaliana] GI:15625407; contains Pfam
profile PF00385: 'chromo' (CHRromatin Organization
MOdifier)
Length = 445
Score = 27.9 bits (59), Expect = 8.5
Identities = 13/43 (30%), Positives = 23/43 (53%)
Frame = -2
Query: 726 SKQIYIYNNKKIYSPTVNRTRTPSGSNDQNSRDSRRLASVGRE 598
++Q+ + +N+K Y PT+N R P N+ N + +G E
Sbjct: 247 ARQVRLIDNEKEYDPTLNELRGP--VNNSNGAGCSQGGGIGSE 287
>At3g55760.2 68416.m06196 expressed protein
Length = 578
Score = 27.9 bits (59), Expect = 8.5
Identities = 13/35 (37%), Positives = 19/35 (54%)
Frame = +3
Query: 582 GQAGSTLVRPTRVFASRDYSDRWSRWGSGFDSRWD 686
GQ GST + T +A R D W +WG +D ++
Sbjct: 461 GQGGST--KYTDKWAERWVGDGWDKWGDKWDENFN 493
>At3g55760.1 68416.m06195 expressed protein
Length = 578
Score = 27.9 bits (59), Expect = 8.5
Identities = 13/35 (37%), Positives = 19/35 (54%)
Frame = +3
Query: 582 GQAGSTLVRPTRVFASRDYSDRWSRWGSGFDSRWD 686
GQ GST + T +A R D W +WG +D ++
Sbjct: 461 GQGGST--KYTDKWAERWVGDGWDKWGDKWDENFN 493
>At3g20840.1 68416.m02635 ovule development protein, putative
similar to ovule development protein AINTEGUMENTA
(GI:1209099)[Arabidopsis thaliana]
Length = 529
Score = 27.9 bits (59), Expect = 8.5
Identities = 13/29 (44%), Positives = 19/29 (65%)
Frame = -1
Query: 736 NSYI*TNLHLQQQKNLQSHRESNPDPQRL 650
+SYI T LHL QQ N ++S+ + Q+L
Sbjct: 402 HSYIQTQLHLHQQTNNYLQQQSSQNSQQL 430
>At1g34650.1 68414.m04309 homeobox-leucine zipper family protein /
lipid-binding START domain-containing protein similar to
homeobox 1 (GP:12002853) {Picea abies}; contains Pfam
PF00046: Homeobox domain and Pfam PF01852: START domain
Length = 708
Score = 27.9 bits (59), Expect = 8.5
Identities = 15/35 (42%), Positives = 19/35 (54%)
Frame = -1
Query: 772 DDSAPLAPVRYKNSYI*TNLHLQQQKNLQSHRESN 668
D A + P YK Y N HL+ + LQSH ES+
Sbjct: 253 DGRAIIDPGNYKR-YFTKNSHLKSRSALQSHHESS 286
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,739,339
Number of Sequences: 28952
Number of extensions: 338773
Number of successful extensions: 1072
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 1027
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1068
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1863090400
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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