Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--1127
(762 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1F7.13c |rpl801|rpl8-1, rpl18, rpk5a, rpl2-1, SPAC21E11.02c|... 151 8e-38
SPBC2F12.07c |rpl802|rpl8-2, rpk37, rpk5b|60S ribosomal protein ... 151 8e-38
SPBC839.04 |rpl803|rpl8-3, rpk5-b, rpkD4|60S ribosomal protein L... 151 8e-38
SPCC16C4.15 |rml2||mitochondrial ribosomal protein subunit L2|Sc... 41 2e-04
SPCC1494.06c |||ATP-dependent RNA helicase Dbp9 |Schizosaccharom... 32 0.10
SPAC1F12.10c |||NADPH-hemoprotein reductase |Schizosaccharomyces... 28 1.3
SPAC9.12c |atp12||F1-ATPase chaperone Atp12 |Schizosaccharomyces... 28 1.7
SPAC3F10.10c |map3||pheromone M-factor receptor |Schizosaccharom... 27 2.2
SPBC16D10.05 |mok13||alpha-1,3-glucan synthase Mok13|Schizosacch... 26 6.7
SPCC18.01c |adg3|SPCC74.07c|beta-glucosidase Adg3 |Schizosacchar... 26 6.7
>SPAC1F7.13c |rpl801|rpl8-1, rpl18, rpk5a, rpl2-1, SPAC21E11.02c|60S
ribosomal protein L8|Schizosaccharomyces pombe|chr
1|||Manual
Length = 253
Score = 151 bits (367), Expect = 8e-38
Identities = 64/82 (78%), Positives = 76/82 (92%)
Frame = +2
Query: 506 QGMVGIVAGGGRIDKPILKAGRAYHKYKVKRNCWPYVRGVAMNPVEHPHGGGNHQHIGKA 685
+G+VGIVAGGGRIDKP+LKAGRA+HKY+VKRNCWP RGVAMNPV+HPHGGGNHQH+G +
Sbjct: 162 RGVVGIVAGGGRIDKPLLKAGRAFHKYRVKRNCWPRTRGVAMNPVDHPHGGGNHQHVGHS 221
Query: 686 STVKRGTSAGRKVGLIAARRTG 751
+TV R ++ G+KVGLIAARRTG
Sbjct: 222 TTVPRQSAPGQKVGLIAARRTG 243
Score = 127 bits (307), Expect = 1e-30
Identities = 56/82 (68%), Positives = 67/82 (81%)
Frame = +3
Query: 264 LYTGQFVYCGKKATLEVGNVMPVGAMPEGTIVCNLEEKMXDRGRLARASGNFATVIGHNP 443
+YTGQFVYCGK A L VGNV+PVG MPEGTI+ N+EEK DRG L R+SGN+ ++GH+
Sbjct: 81 MYTGQFVYCGKNAALTVGNVLPVGEMPEGTIISNVEEKAGDRGALGRSSGNYVIIVGHDV 140
Query: 444 DAKRTRVKLPSGAKKVLPSSNR 509
D +TRVKLPSGAKKV+PSS R
Sbjct: 141 DTGKTRVKLPSGAKKVVPSSAR 162
Score = 115 bits (276), Expect = 9e-27
Identities = 52/83 (62%), Positives = 68/83 (81%)
Frame = +2
Query: 23 MGRVIRAQRKGAGSVFVSHTKKRKGAPKLRSLDYAERHGYIKGVVKDIIHDPGRGAPLAV 202
MGRVIRAQRK +G +F +HT+ RKGA +LR+LD+AERHGYI+GVV+ IIHDPGRGAPLA
Sbjct: 1 MGRVIRAQRK-SGGIFQAHTRLRKGAAQLRTLDFAERHGYIRGVVQKIIHDPGRGAPLAK 59
Query: 203 VHFRDPYKFKTRKELFIVPKALH 271
V FR+PY ++T E F+ + ++
Sbjct: 60 VAFRNPYHYRTDVETFVATEGMY 82
>SPBC2F12.07c |rpl802|rpl8-2, rpk37, rpk5b|60S ribosomal protein
L8|Schizosaccharomyces pombe|chr 2|||Manual
Length = 253
Score = 151 bits (367), Expect = 8e-38
Identities = 64/82 (78%), Positives = 76/82 (92%)
Frame = +2
Query: 506 QGMVGIVAGGGRIDKPILKAGRAYHKYKVKRNCWPYVRGVAMNPVEHPHGGGNHQHIGKA 685
+G+VGIVAGGGRIDKP+LKAGRA+HKY+VKRNCWP RGVAMNPV+HPHGGGNHQH+G +
Sbjct: 162 RGVVGIVAGGGRIDKPLLKAGRAFHKYRVKRNCWPRTRGVAMNPVDHPHGGGNHQHVGHS 221
Query: 686 STVKRGTSAGRKVGLIAARRTG 751
+TV R ++ G+KVGLIAARRTG
Sbjct: 222 TTVPRQSAPGQKVGLIAARRTG 243
Score = 127 bits (307), Expect = 1e-30
Identities = 56/82 (68%), Positives = 67/82 (81%)
Frame = +3
Query: 264 LYTGQFVYCGKKATLEVGNVMPVGAMPEGTIVCNLEEKMXDRGRLARASGNFATVIGHNP 443
+YTGQFVYCGK A L VGNV+PVG MPEGTI+ N+EEK DRG L R+SGN+ ++GH+
Sbjct: 81 MYTGQFVYCGKNAALTVGNVLPVGEMPEGTIISNVEEKAGDRGALGRSSGNYVIIVGHDV 140
Query: 444 DAKRTRVKLPSGAKKVLPSSNR 509
D +TRVKLPSGAKKV+PSS R
Sbjct: 141 DTGKTRVKLPSGAKKVVPSSAR 162
Score = 115 bits (276), Expect = 9e-27
Identities = 52/83 (62%), Positives = 68/83 (81%)
Frame = +2
Query: 23 MGRVIRAQRKGAGSVFVSHTKKRKGAPKLRSLDYAERHGYIKGVVKDIIHDPGRGAPLAV 202
MGRVIRAQRK +G +F +HT+ RKGA +LR+LD+AERHGYI+GVV+ IIHDPGRGAPLA
Sbjct: 1 MGRVIRAQRK-SGGIFQAHTRLRKGAAQLRTLDFAERHGYIRGVVQKIIHDPGRGAPLAK 59
Query: 203 VHFRDPYKFKTRKELFIVPKALH 271
V FR+PY ++T E F+ + ++
Sbjct: 60 VAFRNPYHYRTDVETFVATEGMY 82
>SPBC839.04 |rpl803|rpl8-3, rpk5-b, rpkD4|60S ribosomal protein
L8|Schizosaccharomyces pombe|chr 2|||Manual
Length = 253
Score = 151 bits (367), Expect = 8e-38
Identities = 64/82 (78%), Positives = 76/82 (92%)
Frame = +2
Query: 506 QGMVGIVAGGGRIDKPILKAGRAYHKYKVKRNCWPYVRGVAMNPVEHPHGGGNHQHIGKA 685
+G+VGIVAGGGRIDKP+LKAGRA+HKY+VKRNCWP RGVAMNPV+HPHGGGNHQH+G +
Sbjct: 162 RGVVGIVAGGGRIDKPLLKAGRAFHKYRVKRNCWPRTRGVAMNPVDHPHGGGNHQHVGHS 221
Query: 686 STVKRGTSAGRKVGLIAARRTG 751
+TV R ++ G+KVGLIAARRTG
Sbjct: 222 TTVPRQSAPGQKVGLIAARRTG 243
Score = 127 bits (307), Expect = 1e-30
Identities = 56/82 (68%), Positives = 67/82 (81%)
Frame = +3
Query: 264 LYTGQFVYCGKKATLEVGNVMPVGAMPEGTIVCNLEEKMXDRGRLARASGNFATVIGHNP 443
+YTGQFVYCGK A L VGNV+PVG MPEGTI+ N+EEK DRG L R+SGN+ ++GH+
Sbjct: 81 MYTGQFVYCGKNAALTVGNVLPVGEMPEGTIISNVEEKAGDRGALGRSSGNYVIIVGHDV 140
Query: 444 DAKRTRVKLPSGAKKVLPSSNR 509
D +TRVKLPSGAKKV+PSS R
Sbjct: 141 DTGKTRVKLPSGAKKVVPSSAR 162
Score = 115 bits (276), Expect = 9e-27
Identities = 52/83 (62%), Positives = 68/83 (81%)
Frame = +2
Query: 23 MGRVIRAQRKGAGSVFVSHTKKRKGAPKLRSLDYAERHGYIKGVVKDIIHDPGRGAPLAV 202
MGRVIRAQRK +G +F +HT+ RKGA +LR+LD+AERHGYI+GVV+ IIHDPGRGAPLA
Sbjct: 1 MGRVIRAQRK-SGGIFQAHTRLRKGAAQLRTLDFAERHGYIRGVVQKIIHDPGRGAPLAK 59
Query: 203 VHFRDPYKFKTRKELFIVPKALH 271
V FR+PY ++T E F+ + ++
Sbjct: 60 VAFRNPYHYRTDVETFVATEGMY 82
>SPCC16C4.15 |rml2||mitochondrial ribosomal protein subunit
L2|Schizosaccharomyces pombe|chr 3|||Manual
Length = 318
Score = 41.1 bits (92), Expect = 2e-04
Identities = 16/24 (66%), Positives = 18/24 (75%)
Frame = +2
Query: 608 PYVRGVAMNPVEHPHGGGNHQHIG 679
P VRG AMNP +HPHGGG + IG
Sbjct: 256 PTVRGTAMNPCDHPHGGGGGKSIG 279
>SPCC1494.06c |||ATP-dependent RNA helicase Dbp9
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 595
Score = 31.9 bits (69), Expect = 0.10
Identities = 18/48 (37%), Positives = 28/48 (58%), Gaps = 1/48 (2%)
Frame = -3
Query: 553 RFVNTSTSSNNT-DHALLLDGRTFLAPDGSFTLVRLASGLCPITVAKF 413
RF+N +T+S++T LLLD + S +V +ASG+ P+ KF
Sbjct: 120 RFINVATNSSDTVQRPLLLDLPDIVIATPSRCVVHVASGVLPLDKLKF 167
>SPAC1F12.10c |||NADPH-hemoprotein reductase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 147
Score = 28.3 bits (60), Expect = 1.3
Identities = 11/31 (35%), Positives = 16/31 (51%)
Frame = +2
Query: 542 IDKPILKAGRAYHKYKVKRNCWPYVRGVAMN 634
++KPI K+K K +CW +RG N
Sbjct: 68 VEKPIPVTKEELAKHKTKEDCWIAIRGKVYN 98
>SPAC9.12c |atp12||F1-ATPase chaperone Atp12 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 287
Score = 27.9 bits (59), Expect = 1.7
Identities = 13/37 (35%), Positives = 19/37 (51%)
Frame = -3
Query: 565 SFQNRFVNTSTSSNNTDHALLLDGRTFLAPDGSFTLV 455
SF+ + NT+T N + + LDGR +P G V
Sbjct: 37 SFRRFWKNTATKIQNGEVLIQLDGRNLKSPSGKIVKV 73
>SPAC3F10.10c |map3||pheromone M-factor receptor
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 365
Score = 27.5 bits (58), Expect = 2.2
Identities = 12/39 (30%), Positives = 19/39 (48%)
Frame = -1
Query: 567 PAFKIGLSIRPPPATIPTMPCCLMAEPSWLQTVALLLYA 451
P K+GL+ PP + M W + VAL+L++
Sbjct: 255 PTTKVGLNDWVPPTVLYLMSLFFSTSGGWTEKVALILWS 293
>SPBC16D10.05 |mok13||alpha-1,3-glucan synthase
Mok13|Schizosaccharomyces pombe|chr 2|||Manual
Length = 2358
Score = 25.8 bits (54), Expect = 6.7
Identities = 14/51 (27%), Positives = 21/51 (41%)
Frame = -1
Query: 618 RTYGQQLRLTLYLWYALPAFKIGLSIRPPPATIPTMPCCLMAEPSWLQTVA 466
R Y LR Y+ P F+ S P PA + + + +W Q +A
Sbjct: 1211 RVYSHNLRNITYILLEAPVFRKQTSAEPYPARMDDLSSAIFYS-AWNQCIA 1260
>SPCC18.01c |adg3|SPCC74.07c|beta-glucosidase Adg3
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1131
Score = 25.8 bits (54), Expect = 6.7
Identities = 27/118 (22%), Positives = 51/118 (43%), Gaps = 3/118 (2%)
Frame = -3
Query: 748 GPASSNKTNFATSRCSSLDSGSLTYMLMVTTTVRMLY-RVHG-NTTYIWPAVTFDLVLVV 575
G ASS+ + A SS +GSL Y T V ++ R G ++T + + F
Sbjct: 439 GSASSSSASLAVPTVSSSTTGSLHYKTTTTVWVTEVFTRYLGDDSTPVTSSSIFSTATEA 498
Query: 574 CPSSFQ-NRFVNTSTSSNNTDHALLLDGRTFLAPDGSFTLVRLASGLCPITVAKFPEA 404
+S Q + + S+S++N + + + G+ + L+S ++ + P A
Sbjct: 499 TDTSVQTSSAIYDSSSTSNIQSS----SSVYASSTGALSSNSLSSSTSSVSTSYIPNA 552
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,219,476
Number of Sequences: 5004
Number of extensions: 69536
Number of successful extensions: 209
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 193
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 206
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 365309308
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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