Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--1127
(762 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_02_0812 + 23383704-23384143,23384902-23385247 151 6e-37
06_01_0811 - 6113491-6113925,6114079-6114185,6114569-6114788,611... 33 0.25
08_02_0847 - 21828372-21828545,21829043-21829206,21829831-218299... 30 1.7
06_02_0282 + 13720419-13720985 30 2.3
06_01_0026 + 265755-265968,267319-267468,267694-267738,267786-26... 29 3.1
04_04_1580 - 34576595-34576723,34576905-34576981,34577058-345771... 29 3.1
11_06_0325 + 22376195-22377001,22377136-22377525,22377638-223777... 29 5.3
05_03_0555 + 15425486-15426856 29 5.3
02_05_0812 + 31942591-31942758,31943415-31943491,31944169-319443... 29 5.3
01_01_0841 - 6564029-6564348,6564654-6564686,6564793-6565450,656... 29 5.3
>12_02_0812 + 23383704-23384143,23384902-23385247
Length = 261
Score = 151 bits (366), Expect = 6e-37
Identities = 66/83 (79%), Positives = 73/83 (87%)
Frame = +2
Query: 506 QGMVGIVAGGGRIDKPILKAGRAYHKYKVKRNCWPYVRGVAMNPVEHPHGGGNHQHIGKA 685
+ M+G VAGGGR +KP+LKAG AYHKY+VKRNCWP VRGVAMNPVEHPHGGGNHQHIG A
Sbjct: 163 RAMIGQVAGGGRTEKPMLKAGNAYHKYRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHA 222
Query: 686 STVKRGTSAGRKVGLIAARRTGR 754
STV+R G+KVGLIAARRTGR
Sbjct: 223 STVRRDAPPGQKVGLIAARRTGR 245
Score = 124 bits (300), Expect = 6e-29
Identities = 56/83 (67%), Positives = 68/83 (81%)
Frame = +2
Query: 23 MGRVIRAQRKGAGSVFVSHTKKRKGAPKLRSLDYAERHGYIKGVVKDIIHDPGRGAPLAV 202
MGRVIRAQRKGAGSVF SHT RKG + RSLD+ ER+GY+KGVV DIIHDPGRGAPLA
Sbjct: 1 MGRVIRAQRKGAGSVFKSHTHHRKGPARFRSLDFGERNGYLKGVVTDIIHDPGRGAPLAK 60
Query: 203 VHFRDPYKFKTRKELFIVPKALH 271
V FR P+++K +KELF+ + ++
Sbjct: 61 VTFRHPFRYKHQKELFVAAEGMY 83
Score = 124 bits (298), Expect = 1e-28
Identities = 52/83 (62%), Positives = 69/83 (83%)
Frame = +3
Query: 264 LYTGQFVYCGKKATLEVGNVMPVGAMPEGTIVCNLEEKMXDRGRLARASGNFATVIGHNP 443
+YTGQFVYCG++ATL +GNV+P+ ++PEG +VCN+E + DRG ARASG++A VI HNP
Sbjct: 82 MYTGQFVYCGRRATLSIGNVLPIRSVPEGAVVCNVEHHVGDRGVFARASGDYAIVISHNP 141
Query: 444 DAKRTRVKLPSGAKKVLPSSNRA 512
D +R+KLPSGAKK++PSS RA
Sbjct: 142 DNGTSRIKLPSGAKKIVPSSCRA 164
>06_01_0811 -
6113491-6113925,6114079-6114185,6114569-6114788,
6115112-6115199,6115301-6115431,6115924-6116099,
6116465-6116529,6117014-6117094,6117219-6117358,
6117446-6117532,6117614-6117827,6118102-6118260,
6118860-6118936,6119629-6119796
Length = 715
Score = 33.1 bits (72), Expect = 0.25
Identities = 11/21 (52%), Positives = 14/21 (66%)
Frame = +1
Query: 529 WRWTY*QTYFESWKGIPQVQG 591
W WTY T+F SW +P +QG
Sbjct: 70 WSWTYWSTFFLSWSIVPTLQG 90
>08_02_0847 -
21828372-21828545,21829043-21829206,21829831-21829967,
21830909-21831241,21832067-21833244
Length = 661
Score = 30.3 bits (65), Expect = 1.7
Identities = 32/95 (33%), Positives = 38/95 (40%), Gaps = 3/95 (3%)
Frame = -1
Query: 762 STNLPVLRAAIRPTLRPADVPLLTVEALPIC*WLPPP*GCSTGFMATPRTYGQQLRLTLY 583
ST+ P A RP P D V +LP+ LPPP A R+ L L
Sbjct: 8 STSSPFPFPARRP---PDDTLFYAVYSLPLPTALPPP-----DLHAALRSLHLSLSSHLA 59
Query: 582 LWYALPAFK---IGLSIRPPPATIPTMPCCLMAEP 487
+ A F L+I PP T T PC L A P
Sbjct: 60 PFLASHLFHRDAFALTIPPPDHTAATSPCALCASP 94
>06_02_0282 + 13720419-13720985
Length = 188
Score = 29.9 bits (64), Expect = 2.3
Identities = 13/36 (36%), Positives = 18/36 (50%)
Frame = +2
Query: 644 HPHGGGNHQHIGKASTVKRGTSAGRKVGLIAARRTG 751
+PHGGG H + +R G + +AARR G
Sbjct: 47 NPHGGGGHAPLPPPQNPRRPNLVGAEEVAVAARRRG 82
>06_01_0026 +
265755-265968,267319-267468,267694-267738,267786-268460,
268779-268843,268854-269073,269163-269438,269547-269663,
269776-269853,269930-270184,270235-270323,270403-270816
Length = 865
Score = 29.5 bits (63), Expect = 3.1
Identities = 9/10 (90%), Positives = 9/10 (90%)
Frame = +2
Query: 407 LWKLRHCDWT 436
LWK RHCDWT
Sbjct: 73 LWKCRHCDWT 82
>04_04_1580 -
34576595-34576723,34576905-34576981,34577058-34577104,
34577864-34577964,34578114-34578203,34578647-34578763,
34578835-34578992,34579562-34579843,34580367-34580667
Length = 433
Score = 29.5 bits (63), Expect = 3.1
Identities = 15/51 (29%), Positives = 24/51 (47%)
Frame = -1
Query: 543 IRPPPATIPTMPCCLMAEPSWLQTVALLLYA*HQDCVQSQWRSFQRHVPDD 391
I P +T+P PC + + + T A+L H +Q +FQ VP +
Sbjct: 60 IHHPSSTMPVAPCSYVPRYTMVPTSAMLPLQHHHRQLQISQENFQDRVPSN 110
>11_06_0325 +
22376195-22377001,22377136-22377525,22377638-22377778,
22377888-22378067,22378268-22378447,22378536-22378637,
22378768-22378896,22379318-22379422,22379528-22379623
Length = 709
Score = 28.7 bits (61), Expect = 5.3
Identities = 22/63 (34%), Positives = 29/63 (46%)
Frame = +3
Query: 369 EEKMXDRGRLARASGNFATVIGHNPDAKRTRVKLPSGAKKVLPSSNRAWSVLLLEVDVLT 548
EEK+ + L G +IG N K T +KL G +K + VLL E +VL
Sbjct: 445 EEKLFNNANLIVERGEKIAIIGPNGCGKSTLLKLILGMEK-----TQGGEVLLGEHNVLP 499
Query: 549 NLF 557
N F
Sbjct: 500 NYF 502
>05_03_0555 + 15425486-15426856
Length = 456
Score = 28.7 bits (61), Expect = 5.3
Identities = 15/47 (31%), Positives = 24/47 (51%)
Frame = +2
Query: 461 SKATVWSQEGSAIKQQGMVGIVAGGGRIDKPILKAGRAYHKYKVKRN 601
SK TV +EG +K +G G ID I + ++H ++K+N
Sbjct: 369 SKLTVKKKEGGVLKMEGASEGRKGVLAIDAEIFEVTPSFHLVEIKKN 415
>02_05_0812 +
31942591-31942758,31943415-31943491,31944169-31944327,
31944559-31944772,31944849-31944935,31945022-31945161,
31945380-31945460,31945948-31946012,31946219-31946394,
31947212-31947342,31947438-31947525,31947671-31947884,
31948206-31948312,31948456-31948953
Length = 734
Score = 28.7 bits (61), Expect = 5.3
Identities = 8/21 (38%), Positives = 13/21 (61%)
Frame = +1
Query: 529 WRWTY*QTYFESWKGIPQVQG 591
W W+Y T+ +W +P +QG
Sbjct: 70 WSWSYWSTFILTWAVVPTIQG 90
>01_01_0841 -
6564029-6564348,6564654-6564686,6564793-6565450,
6565530-6565694,6565789-6565878,6565982-6566182,
6566525-6566737,6566835-6567077
Length = 640
Score = 28.7 bits (61), Expect = 5.3
Identities = 13/36 (36%), Positives = 18/36 (50%)
Frame = +2
Query: 620 GVAMNPVEHPHGGGNHQHIGKASTVKRGTSAGRKVG 727
G+A N PHG NHQH ++ T++ K G
Sbjct: 524 GIAANHTSLPHGA-NHQHASPVEIEQKATASWEKDG 558
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,412,636
Number of Sequences: 37544
Number of extensions: 510917
Number of successful extensions: 1556
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1511
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1556
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2039640244
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -