Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--1127
(762 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_19257| Best HMM Match : No HMM Matches (HMM E-Value=.) 160 1e-39
SB_42692| Best HMM Match : Ribosomal_L2_C (HMM E-Value=4.9e-05) 139 3e-33
SB_43058| Best HMM Match : Ribosomal_L2_C (HMM E-Value=8.26766e-44) 35 0.063
SB_44978| Best HMM Match : REJ (HMM E-Value=3.9e-13) 30 1.8
SB_55367| Best HMM Match : Granulin (HMM E-Value=0.00023) 30 2.4
SB_39055| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.2
SB_33652| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.5
>SB_19257| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 260
Score = 160 bits (388), Expect = 1e-39
Identities = 71/82 (86%), Positives = 75/82 (91%)
Frame = +2
Query: 506 QGMVGIVAGGGRIDKPILKAGRAYHKYKVKRNCWPYVRGVAMNPVEHPHGGGNHQHIGKA 685
+ +VGIVAGGGRIDKP+LKAGRAYHKYK KRNCWP VRGVAMNPVEHPHGGGNHQHIG
Sbjct: 163 RALVGIVAGGGRIDKPMLKAGRAYHKYKAKRNCWPRVRGVAMNPVEHPHGGGNHQHIGHP 222
Query: 686 STVKRGTSAGRKVGLIAARRTG 751
STV+R T AGRKVGLIAARRTG
Sbjct: 223 STVRRDTPAGRKVGLIAARRTG 244
Score = 139 bits (337), Expect = 2e-33
Identities = 63/83 (75%), Positives = 71/83 (85%)
Frame = +2
Query: 23 MGRVIRAQRKGAGSVFVSHTKKRKGAPKLRSLDYAERHGYIKGVVKDIIHDPGRGAPLAV 202
MGRVIR QRKGAGS+F SHTK RKGA LR DYAERHGYIKGVVK+IIHDPGRGAPLAV
Sbjct: 1 MGRVIRGQRKGAGSIFTSHTKHRKGAANLRVHDYAERHGYIKGVVKEIIHDPGRGAPLAV 60
Query: 203 VHFRDPYKFKTRKELFIVPKALH 271
V FRDPY++K RKELF+ + ++
Sbjct: 61 VVFRDPYRYKLRKELFVATEGMY 83
Score = 139 bits (336), Expect = 3e-33
Identities = 61/83 (73%), Positives = 72/83 (86%)
Frame = +3
Query: 264 LYTGQFVYCGKKATLEVGNVMPVGAMPEGTIVCNLEEKMXDRGRLARASGNFATVIGHNP 443
+YTGQF+YCGKKA L++GN +PVG MPEGTI+ ++EEK DRGRLAR SGN+ATVI HN
Sbjct: 82 MYTGQFIYCGKKAALQIGNCLPVGIMPEGTIISSVEEKTGDRGRLARTSGNYATVISHNV 141
Query: 444 DAKRTRVKLPSGAKKVLPSSNRA 512
+ KRTRVKLPSG KKV+PSSNRA
Sbjct: 142 EKKRTRVKLPSGIKKVIPSSNRA 164
>SB_42692| Best HMM Match : Ribosomal_L2_C (HMM E-Value=4.9e-05)
Length = 123
Score = 139 bits (336), Expect = 3e-33
Identities = 61/83 (73%), Positives = 72/83 (86%)
Frame = +3
Query: 264 LYTGQFVYCGKKATLEVGNVMPVGAMPEGTIVCNLEEKMXDRGRLARASGNFATVIGHNP 443
+YTGQF+YCGKKA L++GN +PVG MPEGTI+ ++EEK DRGRLAR SGN+ATVI HN
Sbjct: 40 MYTGQFIYCGKKAALQIGNCLPVGIMPEGTIISSVEEKTGDRGRLARTSGNYATVISHNV 99
Query: 444 DAKRTRVKLPSGAKKVLPSSNRA 512
+ KRTRVKLPSG KKV+PSSNRA
Sbjct: 100 EKKRTRVKLPSGIKKVIPSSNRA 122
Score = 69.7 bits (163), Expect = 2e-12
Identities = 29/41 (70%), Positives = 36/41 (87%)
Frame = +2
Query: 149 GVVKDIIHDPGRGAPLAVVHFRDPYKFKTRKELFIVPKALH 271
GVVK+IIHDPGRGAPLAVV FRDPY++K RKELF+ + ++
Sbjct: 1 GVVKEIIHDPGRGAPLAVVVFRDPYRYKLRKELFVATEGMY 41
>SB_43058| Best HMM Match : Ribosomal_L2_C (HMM E-Value=8.26766e-44)
Length = 222
Score = 35.1 bits (77), Expect = 0.063
Identities = 23/67 (34%), Positives = 36/67 (53%)
Frame = +3
Query: 300 ATLEVGNVMPVGAMPEGTIVCNLEEKMXDRGRLARASGNFATVIGHNPDAKRTRVKLPSG 479
A L+ G+ P+ +P GT+V N+E +LARA+G A +I + V+LPS
Sbjct: 110 ALLKPGDAYPLCFLPIGTVVHNIELYPGKGAQLARAAGTSAQLIRKTNET--AVVRLPSK 167
Query: 480 AKKVLPS 500
+K + S
Sbjct: 168 VEKEVSS 174
>SB_44978| Best HMM Match : REJ (HMM E-Value=3.9e-13)
Length = 1819
Score = 30.3 bits (65), Expect = 1.8
Identities = 21/47 (44%), Positives = 26/47 (55%), Gaps = 2/47 (4%)
Frame = -3
Query: 595 FDLVLVVCPSSFQNRFVNT--STSSNNTDHALLLDGRTFLAPDGSFT 461
F L V PSS QN F + + ++ T L+LD TFL PDGS T
Sbjct: 114 FSLNCDVIPSS-QNAFQSFEFNPAATTTYLNLILDSETFLEPDGSAT 159
>SB_55367| Best HMM Match : Granulin (HMM E-Value=0.00023)
Length = 565
Score = 29.9 bits (64), Expect = 2.4
Identities = 12/25 (48%), Positives = 15/25 (60%)
Frame = +1
Query: 193 FGCCTLPRSIQVQDKEGALHCPEGS 267
FGCC +P ++ QDK CP GS
Sbjct: 182 FGCCVMPNAVHCQDKWHC--CPMGS 204
>SB_39055| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 448
Score = 28.3 bits (60), Expect = 7.2
Identities = 15/65 (23%), Positives = 30/65 (46%), Gaps = 2/65 (3%)
Frame = -2
Query: 455 TLSIRIVSNHSGEVSRGTCQTTSIXHFLFKIAHNG--TLRHSSNRHHISNFKSCFLSTIN 282
T SI ++ + + + GTC+ + FK+ H + H + H ++N C + ++
Sbjct: 76 THSILVLLSAAACAANGTCEEPRRRNTFFKLKHKDRMLIDHVISSHDVTNPIHCSMECLS 135
Query: 281 KLACV 267
CV
Sbjct: 136 NQRCV 140
>SB_33652| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 342
Score = 27.9 bits (59), Expect = 9.5
Identities = 16/54 (29%), Positives = 24/54 (44%)
Frame = -1
Query: 732 IRPTLRPADVPLLTVEALPIC*WLPPP*GCSTGFMATPRTYGQQLRLTLYLWYA 571
IRP + V L V + + WLP + + P Y +R TL+L Y+
Sbjct: 222 IRPRDKELGVALFIVTVVSLLTWLPDAVVLNLDSVLAPAQYKHAVRSTLFLRYS 275
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,294,528
Number of Sequences: 59808
Number of extensions: 568363
Number of successful extensions: 1559
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1439
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1554
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2082369341
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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