Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--1127
(762 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z81453-1|CAB03792.1| 260|Caenorhabditis elegans Hypothetical pr... 154 7e-38
AF045646-7|AAK29833.2| 321|Caenorhabditis elegans Hypothetical ... 37 0.018
Z68338-1|CAA92757.1| 134|Caenorhabditis elegans Hypothetical pr... 31 0.89
Z81555-7|CAB04518.1| 561|Caenorhabditis elegans Hypothetical pr... 29 4.8
Z81589-11|CAI58924.1| 330|Caenorhabditis elegans Hypothetical p... 28 6.3
Z81555-8|CAB04512.2| 330|Caenorhabditis elegans Hypothetical pr... 28 6.3
Z99281-24|CAE18027.1| 155|Caenorhabditis elegans Hypothetical p... 28 8.3
AF040646-1|AAK31537.1| 530|Caenorhabditis elegans Collagen prot... 28 8.3
>Z81453-1|CAB03792.1| 260|Caenorhabditis elegans Hypothetical
protein B0250.1 protein.
Length = 260
Score = 154 bits (373), Expect = 7e-38
Identities = 67/83 (80%), Positives = 74/83 (89%)
Frame = +2
Query: 506 QGMVGIVAGGGRIDKPILKAGRAYHKYKVKRNCWPYVRGVAMNPVEHPHGGGNHQHIGKA 685
+ M+G+VAGGGR DKP+LKAGR+YHKYK KRN WP VRGVAMNPVEHPHGGGNHQHIG
Sbjct: 163 RAMIGLVAGGGRTDKPLLKAGRSYHKYKAKRNSWPRVRGVAMNPVEHPHGGGNHQHIGHP 222
Query: 686 STVKRGTSAGRKVGLIAARRTGR 754
STV+R SAG+KVGLIAARRTGR
Sbjct: 223 STVRRDASAGKKVGLIAARRTGR 245
Score = 132 bits (320), Expect = 2e-31
Identities = 59/83 (71%), Positives = 67/83 (80%)
Frame = +2
Query: 23 MGRVIRAQRKGAGSVFVSHTKKRKGAPKLRSLDYAERHGYIKGVVKDIIHDPGRGAPLAV 202
MGR IR QRKGAG +F SH K RKGA KLR LDYAERHGYIKG+VKDIIHDPGRGAPLA+
Sbjct: 1 MGRRIRIQRKGAGGIFKSHNKHRKGASKLRPLDYAERHGYIKGLVKDIIHDPGRGAPLAI 60
Query: 203 VHFRDPYKFKTRKELFIVPKALH 271
+ FRDPYK+KT K + + +H
Sbjct: 61 IAFRDPYKYKTVKTTVVAAEGMH 83
Score = 130 bits (314), Expect = 1e-30
Identities = 53/83 (63%), Positives = 71/83 (85%)
Frame = +3
Query: 264 LYTGQFVYCGKKATLEVGNVMPVGAMPEGTIVCNLEEKMXDRGRLARASGNFATVIGHNP 443
++TGQF++CG KA +++GN++PVG +PEGT +CN+E K DRG +ARASGN+ATVI HNP
Sbjct: 82 MHTGQFIHCGAKAQIQIGNIVPVGTLPEGTTICNVENKSGDRGVIARASGNYATVIAHNP 141
Query: 444 DAKRTRVKLPSGAKKVLPSSNRA 512
D K+TR++LPSGAKKV+ S NRA
Sbjct: 142 DTKKTRIRLPSGAKKVVQSVNRA 164
>AF045646-7|AAK29833.2| 321|Caenorhabditis elegans Hypothetical
protein F56B3.8 protein.
Length = 321
Score = 36.7 bits (81), Expect = 0.018
Identities = 19/54 (35%), Positives = 30/54 (55%), Gaps = 1/54 (1%)
Frame = +3
Query: 315 GNVMPVGAMPEGTIVCNLEE-KMXDRGRLARASGNFATVIGHNPDAKRTRVKLP 473
GN P+G++ GT++ ++E D +A+G AT++ H D T VKLP
Sbjct: 160 GNAYPIGSLAAGTVINSIERYPTMDSETFVKAAGTSATIVRHQGDF--TVVKLP 211
>Z68338-1|CAA92757.1| 134|Caenorhabditis elegans Hypothetical
protein T24B8.1 protein.
Length = 134
Score = 31.1 bits (67), Expect = 0.89
Identities = 16/35 (45%), Positives = 23/35 (65%)
Frame = +3
Query: 429 IGHNPDAKRTRVKLPSGAKKVLPSSNRAWSVLLLE 533
IGH D +RTR LP+G KKVL + + +LL++
Sbjct: 57 IGHGSD-RRTRFVLPNGYKKVLVQNVKDLDMLLMQ 90
>Z81555-7|CAB04518.1| 561|Caenorhabditis elegans Hypothetical
protein F58E10.3a protein.
Length = 561
Score = 28.7 bits (61), Expect = 4.8
Identities = 13/37 (35%), Positives = 20/37 (54%)
Frame = +2
Query: 23 MGRVIRAQRKGAGSVFVSHTKKRKGAPKLRSLDYAER 133
+GR R+ +KG F +HT K L+ LD A++
Sbjct: 464 IGRTGRSDKKGTAYTFFTHTNASKAKDLLKVLDEAKQ 500
>Z81589-11|CAI58924.1| 330|Caenorhabditis elegans Hypothetical
protein F58E10.6 protein.
Length = 330
Score = 28.3 bits (60), Expect = 6.3
Identities = 11/27 (40%), Positives = 17/27 (62%)
Frame = +2
Query: 134 HGYIKGVVKDIIHDPGRGAPLAVVHFR 214
HG + +V I+H P R + LA +HF+
Sbjct: 285 HGVLSTIVMLIVHTPHRKSILATLHFK 311
>Z81555-8|CAB04512.2| 330|Caenorhabditis elegans Hypothetical
protein F58E10.6 protein.
Length = 330
Score = 28.3 bits (60), Expect = 6.3
Identities = 11/27 (40%), Positives = 17/27 (62%)
Frame = +2
Query: 134 HGYIKGVVKDIIHDPGRGAPLAVVHFR 214
HG + +V I+H P R + LA +HF+
Sbjct: 285 HGVLSTIVMLIVHTPHRKSILATLHFK 311
>Z99281-24|CAE18027.1| 155|Caenorhabditis elegans Hypothetical
protein Y57G11C.44 protein.
Length = 155
Score = 27.9 bits (59), Expect = 8.3
Identities = 12/42 (28%), Positives = 24/42 (57%)
Frame = +2
Query: 71 VSHTKKRKGAPKLRSLDYAERHGYIKGVVKDIIHDPGRGAPL 196
+S ++RK + LD+++ G K ++KDI +D + P+
Sbjct: 1 MSEVRQRKSSIIDSDLDFSDSDGEFKEIIKDIENDQWKDKPV 42
>AF040646-1|AAK31537.1| 530|Caenorhabditis elegans Collagen protein
70 protein.
Length = 530
Score = 27.9 bits (59), Expect = 8.3
Identities = 31/111 (27%), Positives = 45/111 (40%), Gaps = 8/111 (7%)
Frame = -1
Query: 693 TVEALPIC*WLP-----PP*GCSTGFMATPRTYG--QQLRLTL-YLWYALPAFKIGLSIR 538
T ALP C + P P +T TPRTY ++ T+ W LP
Sbjct: 301 TTTALPPCVYTPAPPATAPPATATPATQTPRTYSTTTPIKTTVPQQWTTLPP-----GPE 355
Query: 537 PPPATIPTMPCCLMAEPSWLQTVALLLYA*HQDCVQSQWRSFQRHVPDDLY 385
P P P+ CC + TV+ + +Q C QS ++QR + + Y
Sbjct: 356 PTPGQGPSGECCYIDLRRIQVTVSCGVSIGNQCCHQSCSGTYQRQINLNYY 406
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,267,148
Number of Sequences: 27780
Number of extensions: 409449
Number of successful extensions: 1063
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1034
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1063
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1819579054
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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