Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1127
         (762 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g36130.1 68417.m05142 60S ribosomal protein L8 (RPL8C) riboso...   151   4e-37
At3g51190.1 68416.m05604 60S ribosomal protein L8 (RPL8B) riboso...   151   5e-37
At2g18020.1 68415.m02094 60S ribosomal protein L8 (RPL8A)             147   8e-36
At4g14250.1 68417.m02198 UBX domain-containing protein low simil...    46   4e-05
At2g44065.2 68415.m05480 ribosomal protein L2 family protein sim...    43   3e-04
At2g44065.1 68415.m05479 ribosomal protein L2 family protein sim...    43   3e-04
At4g33410.1 68417.m04748 signal peptide peptidase family protein...    29   3.4  
At5g52600.1 68418.m06531 myb family transcription factor (MYB82)...    29   4.5  
At5g65290.1 68418.m08212 LMBR1 integral membrane family protein ...    28   5.9  
At2g41230.1 68415.m05091 expressed protein                             28   5.9  
At5g42400.1 68418.m05162 SET domain-containing protein (TXR7) co...    28   7.8  

>At4g36130.1 68417.m05142 60S ribosomal protein L8 (RPL8C) ribosomal
           protein L8, cytosolic, tomato, PIR1:R5TOL8
          Length = 258

 Score =  151 bits (367), Expect = 4e-37
 Identities = 66/83 (79%), Positives = 73/83 (87%)
 Frame = +2

Query: 506 QGMVGIVAGGGRIDKPILKAGRAYHKYKVKRNCWPYVRGVAMNPVEHPHGGGNHQHIGKA 685
           + M+G VAGGGR +KP+LKAG AYHKY+VKRNCWP VRGVAMNPVEHPHGGGNHQHIG A
Sbjct: 163 RAMIGQVAGGGRTEKPMLKAGNAYHKYRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHA 222

Query: 686 STVKRGTSAGRKVGLIAARRTGR 754
           STV+R    G+KVGLIAARRTGR
Sbjct: 223 STVRRDAPPGKKVGLIAARRTGR 245



 Score =  125 bits (302), Expect = 3e-29
 Identities = 57/83 (68%), Positives = 68/83 (81%)
 Frame = +2

Query: 23  MGRVIRAQRKGAGSVFVSHTKKRKGAPKLRSLDYAERHGYIKGVVKDIIHDPGRGAPLAV 202
           MGRVIRAQRKGAGSVF SHT  RKG  K RSLD+ ER+GY+KGVV +IIHDPGRGAPLA 
Sbjct: 1   MGRVIRAQRKGAGSVFKSHTHHRKGPAKFRSLDFGERNGYLKGVVTEIIHDPGRGAPLAR 60

Query: 203 VHFRDPYKFKTRKELFIVPKALH 271
           V FR P++FK +KELF+  + ++
Sbjct: 61  VAFRHPFRFKKQKELFVAAEGMY 83



 Score =  121 bits (291), Expect = 6e-28
 Identities = 51/83 (61%), Positives = 68/83 (81%)
 Frame = +3

Query: 264 LYTGQFVYCGKKATLEVGNVMPVGAMPEGTIVCNLEEKMXDRGRLARASGNFATVIGHNP 443
           +YTGQF+YCGKKATL VGNV+P+ ++PEG ++CN+E  + DRG  ARASG++A VI HNP
Sbjct: 82  MYTGQFLYCGKKATLVVGNVLPLRSIPEGAVICNVEHHVGDRGVFARASGDYAIVIAHNP 141

Query: 444 DAKRTRVKLPSGAKKVLPSSNRA 512
           D   +R+KLPSG+KK++PS  RA
Sbjct: 142 DNDTSRIKLPSGSKKIVPSGCRA 164


>At3g51190.1 68416.m05604 60S ribosomal protein L8 (RPL8B) ribosomal
           protein L8, cytosolic - Arabidopsis thaliana, PIR:T04582
          Length = 260

 Score =  151 bits (366), Expect = 5e-37
 Identities = 67/83 (80%), Positives = 71/83 (85%)
 Frame = +2

Query: 506 QGMVGIVAGGGRIDKPILKAGRAYHKYKVKRNCWPYVRGVAMNPVEHPHGGGNHQHIGKA 685
           + M+G VAGGGR +KP LKAG AYHKYK KRNCWP VRGVAMNPVEHPHGGGNHQHIG A
Sbjct: 164 RAMIGQVAGGGRTEKPFLKAGNAYHKYKAKRNCWPVVRGVAMNPVEHPHGGGNHQHIGHA 223

Query: 686 STVKRGTSAGRKVGLIAARRTGR 754
           STV+R  SAG KVG IAARRTGR
Sbjct: 224 STVRRDKSAGAKVGQIAARRTGR 246



 Score =  126 bits (303), Expect = 2e-29
 Identities = 53/83 (63%), Positives = 71/83 (85%)
 Frame = +3

Query: 264 LYTGQFVYCGKKATLEVGNVMPVGAMPEGTIVCNLEEKMXDRGRLARASGNFATVIGHNP 443
           +YTGQ++YCGKKA L VGNV+P+G++PEG ++CN+E  + DRG LARASG++A VI HNP
Sbjct: 83  MYTGQYLYCGKKANLMVGNVLPLGSIPEGAVICNVELHVGDRGALARASGDYAIVIAHNP 142

Query: 444 DAKRTRVKLPSGAKKVLPSSNRA 512
           ++  TRVKLPSG+KK+LPS+ RA
Sbjct: 143 ESNTTRVKLPSGSKKILPSACRA 165



 Score =  118 bits (283), Expect = 6e-27
 Identities = 55/84 (65%), Positives = 67/84 (79%), Gaps = 1/84 (1%)
 Frame = +2

Query: 23  MGRVIRAQRKGA-GSVFVSHTKKRKGAPKLRSLDYAERHGYIKGVVKDIIHDPGRGAPLA 199
           MGRVIRAQRKGA GSVF SHT  RKG  K RSLDY ER+GY+KG+V +IIHDPGRGAPLA
Sbjct: 1   MGRVIRAQRKGAAGSVFKSHTHHRKGPAKFRSLDYGERNGYLKGLVTEIIHDPGRGAPLA 60

Query: 200 VVHFRDPYKFKTRKELFIVPKALH 271
            V FR P+++  +KELF+  + ++
Sbjct: 61  RVAFRHPFRYMKQKELFVAAEGMY 84


>At2g18020.1 68415.m02094 60S ribosomal protein L8 (RPL8A) 
          Length = 258

 Score =  147 bits (356), Expect = 8e-36
 Identities = 65/83 (78%), Positives = 72/83 (86%)
 Frame = +2

Query: 506 QGMVGIVAGGGRIDKPILKAGRAYHKYKVKRNCWPYVRGVAMNPVEHPHGGGNHQHIGKA 685
           + M+G VAGGGR +KP+LKAG AYHKY+VKRN WP VRGVAMNPVEHPHGGGNHQHIG A
Sbjct: 163 RAMIGQVAGGGRTEKPMLKAGNAYHKYRVKRNSWPKVRGVAMNPVEHPHGGGNHQHIGHA 222

Query: 686 STVKRGTSAGRKVGLIAARRTGR 754
           STV+R    G+KVGLIAARRTGR
Sbjct: 223 STVRRDAPPGQKVGLIAARRTGR 245



 Score =  126 bits (303), Expect = 2e-29
 Identities = 54/83 (65%), Positives = 70/83 (84%)
 Frame = +3

Query: 264 LYTGQFVYCGKKATLEVGNVMPVGAMPEGTIVCNLEEKMXDRGRLARASGNFATVIGHNP 443
           +YTGQF+YCGKKATL VGNV+P+ ++PEG +VCN+E  + DRG LARASG++A VI HNP
Sbjct: 82  MYTGQFLYCGKKATLVVGNVLPLRSIPEGAVVCNVEHHVGDRGVLARASGDYAIVIAHNP 141

Query: 444 DAKRTRVKLPSGAKKVLPSSNRA 512
           D+  TR+KLPSG+KK++PS  RA
Sbjct: 142 DSDTTRIKLPSGSKKIVPSGCRA 164



 Score =  125 bits (302), Expect = 3e-29
 Identities = 57/83 (68%), Positives = 68/83 (81%)
 Frame = +2

Query: 23  MGRVIRAQRKGAGSVFVSHTKKRKGAPKLRSLDYAERHGYIKGVVKDIIHDPGRGAPLAV 202
           MGRVIRAQRKGAGSVF SHT  RKG  K RSLD+ ER+GY+KGVV +IIHDPGRGAPLA 
Sbjct: 1   MGRVIRAQRKGAGSVFKSHTHHRKGPAKFRSLDFGERNGYLKGVVTEIIHDPGRGAPLAR 60

Query: 203 VHFRDPYKFKTRKELFIVPKALH 271
           V FR P++FK +KELF+  + ++
Sbjct: 61  VTFRHPFRFKKQKELFVAAEGMY 83


>At4g14250.1 68417.m02198 UBX domain-containing protein low
           similarity to 60S ribosomal protein L2 [Nicotiana
           tabacum] GI:9230281; contains Pfam profile PF00789: UBX
           domain
          Length = 724

 Score = 45.6 bits (103), Expect = 4e-05
 Identities = 20/27 (74%), Positives = 21/27 (77%), Gaps = 1/27 (3%)
 Frame = +2

Query: 581 KYKVKRNCWPYVRGVAM-NPVEHPHGG 658
           K  +KRN W  VRGVAM NPVEHPHGG
Sbjct: 411 KLMIKRNMWAKVRGVAMMNPVEHPHGG 437


>At2g44065.2 68415.m05480 ribosomal protein L2 family protein
           similar to ribosomal protein L2 [Gossypium arboreum]
           GI:17644114; contains Pfam profile  PF03947: Ribosomal
           Proteins L2, C-terminal domain
          Length = 214

 Score = 42.7 bits (96), Expect = 3e-04
 Identities = 23/67 (34%), Positives = 37/67 (55%)
 Frame = +3

Query: 312 VGNVMPVGAMPEGTIVCNLEEKMXDRGRLARASGNFATVIGHNPDAKRTRVKLPSGAKKV 491
           +G+ MP+G M  GTI+ N+E       ++ RA+G  A ++   P   +  +KLPSG  K 
Sbjct: 59  IGSSMPLGMMRIGTIIHNIEMNPGQGAKMVRAAGTNAKIL-KEPAKGKCLIKLPSGDTKW 117

Query: 492 LPSSNRA 512
           + +  RA
Sbjct: 118 INAKCRA 124



 Score = 40.7 bits (91), Expect = 0.001
 Identities = 18/30 (60%), Positives = 21/30 (70%), Gaps = 4/30 (13%)
 Frame = +2

Query: 584 YKVKRNCW----PYVRGVAMNPVEHPHGGG 661
           YK  ++ W    P VRGVAMNP +HPHGGG
Sbjct: 140 YKAGQSRWLGIRPKVRGVAMNPCDHPHGGG 169


>At2g44065.1 68415.m05479 ribosomal protein L2 family protein
           similar to ribosomal protein L2 [Gossypium arboreum]
           GI:17644114; contains Pfam profile  PF03947: Ribosomal
           Proteins L2, C-terminal domain
          Length = 214

 Score = 42.7 bits (96), Expect = 3e-04
 Identities = 23/67 (34%), Positives = 37/67 (55%)
 Frame = +3

Query: 312 VGNVMPVGAMPEGTIVCNLEEKMXDRGRLARASGNFATVIGHNPDAKRTRVKLPSGAKKV 491
           +G+ MP+G M  GTI+ N+E       ++ RA+G  A ++   P   +  +KLPSG  K 
Sbjct: 59  IGSSMPLGMMRIGTIIHNIEMNPGQGAKMVRAAGTNAKIL-KEPAKGKCLIKLPSGDTKW 117

Query: 492 LPSSNRA 512
           + +  RA
Sbjct: 118 INAKCRA 124



 Score = 40.7 bits (91), Expect = 0.001
 Identities = 18/30 (60%), Positives = 21/30 (70%), Gaps = 4/30 (13%)
 Frame = +2

Query: 584 YKVKRNCW----PYVRGVAMNPVEHPHGGG 661
           YK  ++ W    P VRGVAMNP +HPHGGG
Sbjct: 140 YKAGQSRWLGIRPKVRGVAMNPCDHPHGGG 169


>At4g33410.1 68417.m04748 signal peptide peptidase family protein
           contains Pfam domain PF04258: Membrane protein of
           unknown function (DUF435)
          Length = 372

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 16/44 (36%), Positives = 21/44 (47%), Gaps = 2/44 (4%)
 Frame = -1

Query: 585 YLWYALPAFKIGL--SIRPPPATIPTMPCCLMAEPSWLQTVALL 460
           Y+WYALP + IGL  ++     T    P  L   PS L  V  +
Sbjct: 301 YIWYALPGYAIGLVAALAAGVLTHSPQPALLYLVPSTLGPVIFM 344


>At5g52600.1 68418.m06531 myb family transcription factor (MYB82)
           contains Pfam profile: PF00249 myb-like DNA-binding
           domain; identical to  cDNA putative transcription factor
           (MYB82) mRNA, partial cds GI:3941515
          Length = 201

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 16/54 (29%), Positives = 23/54 (42%)
 Frame = +2

Query: 557 LKAGRAYHKYKVKRNCWPYVRGVAMNPVEHPHGGGNHQHIGKASTVKRGTSAGR 718
           ++  R   K  VKR  W     + +      HG GN   I + S +KRG  + R
Sbjct: 1   MECKREEGKSYVKRGLWKPEEDMILKSYVETHGEGNWADISRRSGLKRGGKSCR 54


>At5g65290.1 68418.m08212 LMBR1 integral membrane family protein
           contains Pfam PF04791: LMBR1-like conserved region
          Length = 733

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 8/21 (38%), Positives = 13/21 (61%)
 Frame = +1

Query: 529 WRWTY*QTYFESWKGIPQVQG 591
           W W+Y  T+  +W  +P +QG
Sbjct: 74  WSWSYWSTFLLTWAVVPLIQG 94


>At2g41230.1 68415.m05091 expressed protein
          Length = 88

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 21/55 (38%), Positives = 27/55 (49%)
 Frame = -1

Query: 660 PPP*GCSTGFMATPRTYGQQLRLTLYLWYALPAFKIGLSIRPPPATIPTMPCCLM 496
           P P G +   + T R+    L L+L L   LP F   L   PPPAT+  +P  LM
Sbjct: 14  PKPMGLNGSSLITARSVALLLFLSLLL-LILPPFLPPLP--PPPATLLLLPLLLM 65


>At5g42400.1 68418.m05162 SET domain-containing protein (TXR7)
            contains Pfam profile PF00856: SET domain
          Length = 1423

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 19/63 (30%), Positives = 32/63 (50%), Gaps = 2/63 (3%)
 Frame = +2

Query: 83   KKRKGAPKL-RSLDYAERHGYIKGVVKDIIHDPGRGAPLAVVHFRDPYKFKTRKELFI-V 256
            K +KG  KL R      +H   +  +KD+  D GR  P+A+          ++K+LF+ +
Sbjct: 1122 KLQKGPNKLIRRRKPLAKHTTERSPIKDLSVDDGRPKPIALKPLEKLSSKPSKKKLFLSI 1181

Query: 257  PKA 265
            PK+
Sbjct: 1182 PKS 1184


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,351,093
Number of Sequences: 28952
Number of extensions: 381827
Number of successful extensions: 1029
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 993
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1027
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1702303248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)