Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1126
         (780 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3F10.10c |map3||pheromone M-factor receptor |Schizosaccharom...    26   7.0  
SPAC1142.04 |||Noc2p-Noc3p complex subunit Noc2 family |Schizosa...    25   9.2  

>SPAC3F10.10c |map3||pheromone M-factor receptor
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 365

 Score = 25.8 bits (54), Expect = 7.0
 Identities = 12/31 (38%), Positives = 14/31 (45%)
 Frame = -3

Query: 661 NSYVIFFFERMCSGLYKIHCLLLFLYITSCL 569
           N YV+       S  Y+    LLF YI  CL
Sbjct: 136 NRYVVICMNGCYSSFYQTWYTLLFFYIPPCL 166


>SPAC1142.04 |||Noc2p-Noc3p complex subunit Noc2 family
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 707

 Score = 25.4 bits (53), Expect = 9.2
 Identities = 12/41 (29%), Positives = 26/41 (63%)
 Frame = -2

Query: 197 QMLYIYIYTINGLLNRHHDFLTSNIVNMFVLES*ACMLLRF 75
           Q  Y  ++T++ +     +FL ++ VN+F+L++ +C L+ F
Sbjct: 368 QSAYTTVHTLDKI-----NFLKNSAVNLFLLDAESCYLIGF 403


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,002,268
Number of Sequences: 5004
Number of extensions: 61721
Number of successful extensions: 129
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 126
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 129
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 377352472
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)