Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1126
         (780 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY753540-1|AAV28543.1| 3320|Anopheles gambiae SGS3 protein.            26   1.5  
AY943928-1|AAX49501.1|  753|Anopheles gambiae laccase-2 isoform ...    25   2.6  
AY578797-1|AAT07302.1|  304|Anopheles gambiae activin protein.         24   4.6  
AY753542-1|AAV28545.1| 3361|Anopheles gambiae SGS5 protein.            24   6.1  
AJ535207-1|CAD59407.1| 1036|Anopheles gambiae SMC5 protein protein.    24   6.1  

>AY753540-1|AAV28543.1| 3320|Anopheles gambiae SGS3 protein.
          Length = 3320

 Score = 25.8 bits (54), Expect = 1.5
 Identities = 9/27 (33%), Positives = 17/27 (62%)
 Frame = -2

Query: 524  QVIVNKSIILN*ISRKHRSHKKYKN*T 444
            ++I+  +++L  + +KHR   KY N T
Sbjct: 2965 EIIITDNLVLTILKKKHRRSVKYSNLT 2991


>AY943928-1|AAX49501.1|  753|Anopheles gambiae laccase-2 isoform A
           protein.
          Length = 753

 Score = 25.0 bits (52), Expect = 2.6
 Identities = 14/39 (35%), Positives = 18/39 (46%)
 Frame = -3

Query: 706 NLPRLAPNIDM**KHNSYVIFFFERMCSGLYKIHCLLLF 590
           NLP L   I +   +N YV+  F     G +  HC  LF
Sbjct: 681 NLPPLKDTIAV--PNNGYVVLRFRADNPGFWLFHCHFLF 717


>AY578797-1|AAT07302.1|  304|Anopheles gambiae activin protein.
          Length = 304

 Score = 24.2 bits (50), Expect = 4.6
 Identities = 10/23 (43%), Positives = 12/23 (52%)
 Frame = +1

Query: 610 FCKGRCTFARRKKSHKNYVFITY 678
           +CKG C  A R  S  +YV   Y
Sbjct: 208 YCKGSCHLADRFSSEYHYVIDQY 230


>AY753542-1|AAV28545.1| 3361|Anopheles gambiae SGS5 protein.
          Length = 3361

 Score = 23.8 bits (49), Expect = 6.1
 Identities = 7/15 (46%), Positives = 13/15 (86%)
 Frame = +3

Query: 93  SSAFENEHIYNITRK 137
           SSAFE +H+Y++ ++
Sbjct: 476 SSAFEQDHVYSLVKE 490


>AJ535207-1|CAD59407.1| 1036|Anopheles gambiae SMC5 protein protein.
          Length = 1036

 Score = 23.8 bits (49), Expect = 6.1
 Identities = 8/20 (40%), Positives = 14/20 (70%)
 Frame = +2

Query: 215 KCCKIIFIRIFNQNQSIIVY 274
           K C +IFI +F+   S+++Y
Sbjct: 8   KVCALIFIILFSTYDSVVLY 27


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 735,373
Number of Sequences: 2352
Number of extensions: 16043
Number of successful extensions: 72
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 71
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 72
length of database: 563,979
effective HSP length: 63
effective length of database: 415,803
effective search space used: 81497388
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)