Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1126
         (780 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY061828-1|AAL27639.1|  532|Drosophila melanogaster GH27795p pro...    29   7.2  
AF257307-1|AAF90125.1|  348|Drosophila melanogaster stretchin-ML...    29   7.2  
AE013599-2148|AAM70939.1| 2403|Drosophila melanogaster CG18255-P...    29   7.2  
AE013599-2147|AAF58087.2| 7210|Drosophila melanogaster CG18255-P...    29   7.2  
AE013599-2142|AAM70937.1| 4463|Drosophila melanogaster CG18255-P...    29   7.2  
AE013599-2141|AAM70936.1| 9270|Drosophila melanogaster CG18255-P...    29   7.2  

>AY061828-1|AAL27639.1|  532|Drosophila melanogaster GH27795p
           protein.
          Length = 532

 Score = 29.1 bits (62), Expect = 7.2
 Identities = 10/31 (32%), Positives = 18/31 (58%)
 Frame = +1

Query: 349 IEQEQNCFVTAKKILHVYLTAVMLKFDPIYL 441
           + Q ++C +T   +LHVY T V     P+++
Sbjct: 161 VAQNESCKITTSAMLHVYETKVNTDVQPVFI 191


>AF257307-1|AAF90125.1|  348|Drosophila melanogaster stretchin-MLCK
           protein.
          Length = 348

 Score = 29.1 bits (62), Expect = 7.2
 Identities = 10/31 (32%), Positives = 18/31 (58%)
 Frame = +1

Query: 349 IEQEQNCFVTAKKILHVYLTAVMLKFDPIYL 441
           + Q ++C +T   +LHVY T V     P+++
Sbjct: 186 VAQNESCKITTSAMLHVYETKVNTDVQPVFI 216


>AE013599-2148|AAM70939.1| 2403|Drosophila melanogaster CG18255-PE,
            isoform E protein.
          Length = 2403

 Score = 29.1 bits (62), Expect = 7.2
 Identities = 10/31 (32%), Positives = 18/31 (58%)
 Frame = +1

Query: 349  IEQEQNCFVTAKKILHVYLTAVMLKFDPIYL 441
            + Q ++C +T   +LHVY T V     P+++
Sbjct: 1041 VAQNESCKITTSAMLHVYETKVNTDVQPVFI 1071


>AE013599-2147|AAF58087.2| 7210|Drosophila melanogaster CG18255-PD,
            isoform D protein.
          Length = 7210

 Score = 29.1 bits (62), Expect = 7.2
 Identities = 10/31 (32%), Positives = 18/31 (58%)
 Frame = +1

Query: 349  IEQEQNCFVTAKKILHVYLTAVMLKFDPIYL 441
            + Q ++C +T   +LHVY T V     P+++
Sbjct: 5848 VAQNESCKITTSAMLHVYETKVNTDVQPVFI 5878


>AE013599-2142|AAM70937.1| 4463|Drosophila melanogaster CG18255-PC,
            isoform C protein.
          Length = 4463

 Score = 29.1 bits (62), Expect = 7.2
 Identities = 10/31 (32%), Positives = 18/31 (58%)
 Frame = +1

Query: 349  IEQEQNCFVTAKKILHVYLTAVMLKFDPIYL 441
            + Q ++C +T   +LHVY T V     P+++
Sbjct: 1041 VAQNESCKITTSAMLHVYETKVNTDVQPVFI 1071


>AE013599-2141|AAM70936.1| 9270|Drosophila melanogaster CG18255-PA,
            isoform A protein.
          Length = 9270

 Score = 29.1 bits (62), Expect = 7.2
 Identities = 10/31 (32%), Positives = 18/31 (58%)
 Frame = +1

Query: 349  IEQEQNCFVTAKKILHVYLTAVMLKFDPIYL 441
            + Q ++C +T   +LHVY T V     P+++
Sbjct: 5848 VAQNESCKITTSAMLHVYETKVNTDVQPVFI 5878


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 29,608,220
Number of Sequences: 53049
Number of extensions: 563244
Number of successful extensions: 897
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 883
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 897
length of database: 24,988,368
effective HSP length: 83
effective length of database: 20,585,301
effective search space used: 3623012976
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)