Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1126
         (780 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

S76956-1|AAB33931.1|  168|Apis mellifera olfactory receptor prot...    25   0.79 
Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1 p...    24   1.8  
S76957-1|AAB33932.1|  169|Apis mellifera olfactory receptor prot...    22   5.6  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              22   5.6  
AF000632-1|AAC61894.1|  452|Apis mellifera major royal jelly pro...    21   9.7  

>S76956-1|AAB33931.1|  168|Apis mellifera olfactory receptor
           protein.
          Length = 168

 Score = 25.0 bits (52), Expect = 0.79
 Identities = 10/33 (30%), Positives = 18/33 (54%)
 Frame = +1

Query: 334 LFKVYIEQEQNCFVTAKKILHVYLTAVMLKFDP 432
           LF +Y++      +   K++ V+ TAV+  F P
Sbjct: 133 LFFIYVQPSATFSLDLNKVVSVFYTAVIPMFSP 165


>Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1
           protein.
          Length = 402

 Score = 23.8 bits (49), Expect = 1.8
 Identities = 12/21 (57%), Positives = 15/21 (71%)
 Frame = -1

Query: 717 SHVPISLGLHQI*ICNENIIL 655
           S VPISLGLH+    NE ++L
Sbjct: 157 SFVPISLGLHR---ANEPVVL 174


>S76957-1|AAB33932.1|  169|Apis mellifera olfactory receptor
           protein.
          Length = 169

 Score = 22.2 bits (45), Expect = 5.6
 Identities = 9/33 (27%), Positives = 17/33 (51%)
 Frame = +1

Query: 334 LFKVYIEQEQNCFVTAKKILHVYLTAVMLKFDP 432
           LF +Y+       +   K++ V+ TAV+   +P
Sbjct: 134 LFFIYVHPSATFSLDLNKVVSVFYTAVIPMLNP 166


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 22.2 bits (45), Expect = 5.6
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = -1

Query: 117  YVRSRKLSLHVTTFLFFYVSWSKQDGRE 34
            Y    +LS     ++F  V +SK+DG+E
Sbjct: 1012 YYVGYRLSSSEKPYMFETVDFSKEDGKE 1039


>AF000632-1|AAC61894.1|  452|Apis mellifera major royal jelly
           protein MRJP2 protein.
          Length = 452

 Score = 21.4 bits (43), Expect = 9.7
 Identities = 10/34 (29%), Positives = 18/34 (52%)
 Frame = +2

Query: 248 NQNQSIIVYVNKNMTFHLCLSIRIILNSIYSKFT 349
           ++  ++IVY N + +FH   S     +  Y+K T
Sbjct: 206 HKGDALIVYQNADDSFHRLTSNTFDYDPRYAKMT 239


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 206,308
Number of Sequences: 438
Number of extensions: 4677
Number of successful extensions: 12
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24518154
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)