Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1125
         (747 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A4AMU4 Cluster: TPR domain protein; n=1; Flavobacterial...    33   5.6  
UniRef50_Q7RH24 Cluster: Streptococcus pyogenes AMV156, putative...    33   5.6  
UniRef50_Q7RK21 Cluster: Putative uncharacterized protein PY0308...    33   7.5  
UniRef50_Q5W2V2 Cluster: Putative uncharacterized protein; n=1; ...    33   7.5  
UniRef50_O16329 Cluster: Seven tm receptor protein 143; n=1; Cae...    33   9.9  

>UniRef50_A4AMU4 Cluster: TPR domain protein; n=1; Flavobacteriales
           bacterium HTCC2170|Rep: TPR domain protein -
           Flavobacteriales bacterium HTCC2170
          Length = 689

 Score = 33.5 bits (73), Expect = 5.6
 Identities = 13/30 (43%), Positives = 20/30 (66%)
 Frame = +1

Query: 169 GWYSRNKNTFESTYNQRHLLLAEHYYNVLP 258
           GWY++  +T ++  N R+LL    YYN+LP
Sbjct: 533 GWYTQLMHTQQTDSNTRNLLFTSLYYNLLP 562


>UniRef50_Q7RH24 Cluster: Streptococcus pyogenes AMV156, putative;
           n=5; Plasmodium (Vinckeia)|Rep: Streptococcus pyogenes
           AMV156, putative - Plasmodium yoelii yoelii
          Length = 1016

 Score = 33.5 bits (73), Expect = 5.6
 Identities = 29/79 (36%), Positives = 40/79 (50%), Gaps = 5/79 (6%)
 Frame = +2

Query: 8   FSSLHFIY--NLTNKQAV--LLHIDNKYYIWRKRKKARIYYNNI-TFVVSEYSGLQKCMD 172
           F SL  IY  NL NK+ +  LL I NKY I +K  K  IY N + +F   +Y  L   + 
Sbjct: 485 FISLFNIYSKNLNNKKIIYMLLQILNKYNIEQKSSKPEIYINLLNSFAKMKYRNL--LLI 542

Query: 173 GTVVTKTRLNLHTISAICY 229
            T + K   NL+++    Y
Sbjct: 543 ETCLKKVTENLNSLHFFDY 561


>UniRef50_Q7RK21 Cluster: Putative uncharacterized protein PY03084;
           n=6; Plasmodium (Vinckeia)|Rep: Putative uncharacterized
           protein PY03084 - Plasmodium yoelii yoelii
          Length = 1509

 Score = 33.1 bits (72), Expect = 7.5
 Identities = 16/54 (29%), Positives = 30/54 (55%), Gaps = 1/54 (1%)
 Frame = +2

Query: 32  NLTNKQAVLLHIDN-KYYIWRKRKKARIYYNNITFVVSEYSGLQKCMDGTVVTK 190
           N+ N++ + ++IDN KYYI  +  K   Y+N I  ++  ++ +   M  +  TK
Sbjct: 511 NIINEEEIYINIDNLKYYIIERNYKNNNYFNEIIKMIIHFNNILLLMLNSSSTK 564


>UniRef50_Q5W2V2 Cluster: Putative uncharacterized protein; n=1;
           Sulfolobus islandicus|Rep: Putative uncharacterized
           protein - Sulfolobus islandicus
          Length = 60

 Score = 33.1 bits (72), Expect = 7.5
 Identities = 19/53 (35%), Positives = 26/53 (49%)
 Frame = +1

Query: 577 LITFTNNHLKLFCRLFSLDFCTYFFLKFYDVLFFSQSNPLAISERYLKISSAL 735
           L+T  N  L  FC   S  FC  F L+ + + F S +NPL +    L  S+ L
Sbjct: 8   LLTLLNFKLSSFC---SFAFCLTFALQIFALFFASATNPLCLLSSLLSSSTPL 57


>UniRef50_O16329 Cluster: Seven tm receptor protein 143; n=1;
           Caenorhabditis elegans|Rep: Seven tm receptor protein
           143 - Caenorhabditis elegans
          Length = 336

 Score = 32.7 bits (71), Expect = 9.9
 Identities = 15/53 (28%), Positives = 26/53 (49%)
 Frame = -2

Query: 212 LYVDSNVFLLRLYHPCTFAAHCTRSLRT*CYCNKFVLFFSFSKYNIYYRYVII 54
           +++  ++F++ L  P TF       + T  YC+ F L  S      YYRY+ +
Sbjct: 67  MHIKQSMFIVMLDSPFTFDVSTGNEI-TCLYCSSFALCISLLAAQFYYRYIAL 118


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 610,818,220
Number of Sequences: 1657284
Number of extensions: 11162268
Number of successful extensions: 29722
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 28363
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 29702
length of database: 575,637,011
effective HSP length: 99
effective length of database: 411,565,895
effective search space used: 61323318355
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)