Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1125
         (747 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1851.02 |||1-acylglycerol-3-phosphate O-acyltransferase|Schi...    28   1.6  
SPBC36B7.09 |gcn2|ppk28, ppk28, SPBP18G5.01|eIF2 alpha kinase Gc...    27   3.8  
SPCC1393.07c |mug4||sequence orphan|Schizosaccharomyces pombe|ch...    26   5.0  
SPAC644.07 |||Rieske ISP assembly protein|Schizosaccharomyces po...    26   6.6  
SPAC6G9.10c |sen1||ATP-dependent 5' to 3' DNA/RNA helicase Sen1|...    25   8.7  
SPAC222.10c |byr4||two-component GAP Byr4|Schizosaccharomyces po...    25   8.7  
SPAC1783.04c |hst4||Sir2 family histone deacetylase Hst4|Schizos...    25   8.7  

>SPAC1851.02 |||1-acylglycerol-3-phosphate
           O-acyltransferase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 279

 Score = 27.9 bits (59), Expect = 1.6
 Identities = 14/41 (34%), Positives = 23/41 (56%)
 Frame = -1

Query: 549 VMELGNSRYSDALHLYAVKESRSIDGSLFSYLFADSLRGYS 427
           V+ +  SR SDA+ L+A    R    ++  ++FA+  R YS
Sbjct: 147 VVFIDRSRRSDAIQLFAKAARRMRKENISIWVFAEGTRSYS 187


>SPBC36B7.09 |gcn2|ppk28, ppk28, SPBP18G5.01|eIF2 alpha kinase Gcn2
            |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1576

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 10/32 (31%), Positives = 20/32 (62%)
 Frame = +3

Query: 24   LFIISQTNKPYYYISIINIIFGEREKKHEFIT 119
            L ++S  N PYY + ++ ++FG+   +H+  T
Sbjct: 932  LRLLSNPNTPYY-LKLLKVLFGQVPDRHKDFT 962


>SPCC1393.07c |mug4||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 845

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 15/33 (45%), Positives = 19/33 (57%)
 Frame = +1

Query: 637 CTYFFLKFYDVLFFSQSNPLAISERYLKISSAL 735
           C Y F  F + L F QS  L +S  Y+ I+SAL
Sbjct: 504 CKYPFQFFINKLPFYQSPSLPLSATYVWIASAL 536


>SPAC644.07 |||Rieske ISP assembly protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 449

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 17/60 (28%), Positives = 28/60 (46%)
 Frame = +2

Query: 20  HFIYNLTNKQAVLLHIDNKYYIWRKRKKARIYYNNITFVVSEYSGLQKCMDGTVVTKTRL 199
           H + N+  K  VLL   +  +  R+R     ++ N+TF     SGL   +DG   +  R+
Sbjct: 287 HLLSNVPPKAVVLLEDVDSAFQGRERSGEVGFHANVTF-----SGLLNALDGVTSSDERI 341


>SPAC6G9.10c |sen1||ATP-dependent 5' to 3' DNA/RNA helicase
           Sen1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1687

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 19/48 (39%), Positives = 25/48 (52%), Gaps = 4/48 (8%)
 Frame = +1

Query: 562 TLFN-KLITFTN---NHLKLFCRLFSLDFCTYFFLKFYDVLFFSQSNP 693
           TL N KL T  N   N +  F  L S D+C+  FL  Y + F+  S+P
Sbjct: 128 TLLNPKLFTCKNIYKNAIDAFNGLLS-DWCSNIFLPGYLLFFYEASHP 174


>SPAC222.10c |byr4||two-component GAP Byr4|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 665

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 8/19 (42%), Positives = 12/19 (63%)
 Frame = +1

Query: 136 SERVQWAAKVHGWYSRNKN 192
           SE +QW  ++ GW+   KN
Sbjct: 630 SEDIQWRKRIDGWFFSFKN 648


>SPAC1783.04c |hst4||Sir2 family histone deacetylase
           Hst4|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 415

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = +2

Query: 89  RKRKKARIYYNNITFVVSEYSGLQKCM 169
           ++ K  R+Y  NI F+ +   GLQ C+
Sbjct: 143 QESKLLRLYTQNIDFLETRLEGLQTCI 169


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,688,177
Number of Sequences: 5004
Number of extensions: 51514
Number of successful extensions: 130
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 124
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 130
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 355273338
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)