Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1125
         (747 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF016433-2|AAB65389.1|  336|Caenorhabditis elegans Seven tm rece...    33   0.28 
AF016433-3|AAB65390.1|  336|Caenorhabditis elegans Seven tm rece...    32   0.50 

>AF016433-2|AAB65389.1|  336|Caenorhabditis elegans Seven tm
           receptor protein 143 protein.
          Length = 336

 Score = 32.7 bits (71), Expect = 0.28
 Identities = 15/53 (28%), Positives = 26/53 (49%)
 Frame = -2

Query: 212 LYVDSNVFLLRLYHPCTFAAHCTRSLRT*CYCNKFVLFFSFSKYNIYYRYVII 54
           +++  ++F++ L  P TF       + T  YC+ F L  S      YYRY+ +
Sbjct: 67  MHIKQSMFIVMLDSPFTFDVSTGNEI-TCLYCSSFALCISLLAAQFYYRYIAL 118


>AF016433-3|AAB65390.1|  336|Caenorhabditis elegans Seven tm
           receptor protein 144 protein.
          Length = 336

 Score = 31.9 bits (69), Expect = 0.50
 Identities = 15/53 (28%), Positives = 26/53 (49%)
 Frame = -2

Query: 212 LYVDSNVFLLRLYHPCTFAAHCTRSLRT*CYCNKFVLFFSFSKYNIYYRYVII 54
           +++  ++F++ L  P TF       + T  YC+ F L  S      YYRY+ +
Sbjct: 67  MHIKQSMFIVMLDGPYTFEIAVGNEI-TCLYCSAFALCISLLAAQFYYRYIAV 118


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,513,360
Number of Sequences: 27780
Number of extensions: 283376
Number of successful extensions: 764
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 729
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 764
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1766990064
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)