Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1125
         (747 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g06680.1 68414.m00708 photosystem II oxygen-evolving complex ...    29   4.3  
At1g44020.1 68414.m05078 DC1 domain-containing protein contains ...    28   7.6  
At2g47600.1 68415.m05939 magnesium/proton exchanger (MHX1) ident...    27   10.0 

>At1g06680.1 68414.m00708 photosystem II oxygen-evolving complex 23
           (OEC23) JBC 14:211-238 (2002); identical to 23 kDa
           polypeptide of oxygen-evolving comlex (OEC) GB:CAA66785
           GI:1769905 [Arabidopsis thaliana]
          Length = 263

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 12/28 (42%), Positives = 18/28 (64%), Gaps = 1/28 (3%)
 Frame = +3

Query: 48  KPYYYISII-NIIFGEREKKHEFITITL 128
           KPYYY+S++     G+   KH+ IT T+
Sbjct: 201 KPYYYLSVLTRTADGDEGGKHQLITATV 228


>At1g44020.1 68414.m05078 DC1 domain-containing protein contains
           Pfam profile PF03107: DC1 domain
          Length = 577

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 12/35 (34%), Positives = 21/35 (60%)
 Frame = +3

Query: 18  YILFIISQTNKPYYYISIINIIFGEREKKHEFITI 122
           Y LFI + TNK    +  +++ + E E + EFI++
Sbjct: 128 YSLFISTDTNKVITLVRSLDLDYSEPEPESEFISV 162


>At2g47600.1 68415.m05939 magnesium/proton exchanger (MHX1)
           identical to magnesium/proton exchanger AtMHX
           [Arabidopsis thaliana] gi|6492237|gb|AAF14229;
           Ca2+:Cation Antiporter (CaCA) Family member
           PMID:11500563
          Length = 539

 Score = 27.5 bits (58), Expect = 10.0
 Identities = 15/55 (27%), Positives = 28/55 (50%)
 Frame = -2

Query: 635 KSRLNKRQNNFK*LFVNVINLLKSVTYNL*WNWAIVGIPTLCIYTQ*KRVDLSTV 471
           KS  N  +++ K + ++ I   + +TY   WN+ I  I  L   T   ++ L+T+
Sbjct: 64  KSMENVVKHSRKVVTIDPITKAEVITYKKVWNFTIADISLLAFGTSFPQISLATI 118


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,167,534
Number of Sequences: 28952
Number of extensions: 240410
Number of successful extensions: 481
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 473
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 481
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1653386488
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)