Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1124
         (787 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC2C4.07c |||ribonuclease II |Schizosaccharomyces pombe|chr 1|...    29   1.00 
SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual    28   1.3  
SPAP8A3.13c |||Vid 24 family protein|Schizosaccharomyces pombe|c...    27   2.3  
SPAC26H5.05 |||IPT/TIG ankyrin repeat protein|Schizosaccharomyce...    27   4.0  
SPAC688.08 |srb8|med12|mediator complex subunit Srb8 |Schizosacc...    26   5.3  
SPCC1235.04c |||FAD synthetase|Schizosaccharomyces pombe|chr 3||...    26   5.3  
SPBC26H8.10 |dis3|rrp44|3'-5' exoribonuclease subunit Dis3 |Schi...    26   5.3  
SPAC17G8.02 |||uridine ribohydrolase |Schizosaccharomyces pombe|...    26   7.0  
SPAC1420.01c ||SPAC56E4.08c|DUF1752 family protein|Schizosacchar...    25   9.3  

>SPAC2C4.07c |||ribonuclease II |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 927

 Score = 28.7 bits (61), Expect = 1.00
 Identities = 12/31 (38%), Positives = 20/31 (64%)
 Frame = -1

Query: 106 TIFSGKPLIIKXPPLVSKNLCSLGPFLQRLS 14
           T++  +  I   PPL+ + LCSL P ++RL+
Sbjct: 503 TVYLVQKAIPMLPPLLCERLCSLNPNVERLA 533


>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1236

 Score = 28.3 bits (60), Expect = 1.3
 Identities = 23/85 (27%), Positives = 36/85 (42%)
 Frame = -2

Query: 546 SPGYEIS*DLIKKAAASDSTDCISASVSSCIETPKLFPSSIFGIINEIHILSKFESSTSS 367
           S  +  S   I    +S S     +SVSS + +    PSS    I+     S F S+++S
Sbjct: 550 SSDFSSSITTISSGISSSSIPSTFSSVSSILSSSTSSPSSTSLSISSSSTSSTFSSASTS 609

Query: 366 LMCGLTRCIRSLSGLLQGTEPFGST 292
               ++  I S S +L    P  S+
Sbjct: 610 SPSSISSSISSSSTILSSPTPSTSS 634


>SPAP8A3.13c |||Vid 24 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 547

 Score = 27.5 bits (58), Expect = 2.3
 Identities = 14/37 (37%), Positives = 21/37 (56%)
 Frame = +3

Query: 141 QNRNLSDVHQDLNIPIPTPPATSNNEPNAKRQRLDSS 251
           Q+ ++S  H  L+IP+P P   SNN  N    ++ SS
Sbjct: 61  QDSSISFTHDPLHIPLPNP---SNNNDNIFHPQVHSS 94


>SPAC26H5.05 |||IPT/TIG ankyrin repeat protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1151

 Score = 26.6 bits (56), Expect = 4.0
 Identities = 11/19 (57%), Positives = 13/19 (68%)
 Frame = +3

Query: 198 PATSNNEPNAKRQRLDSSE 254
           P  S+N PN KR+R  SSE
Sbjct: 490 PTRSDNPPNEKRRRTSSSE 508


>SPAC688.08 |srb8|med12|mediator complex subunit Srb8
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1233

 Score = 26.2 bits (55), Expect = 5.3
 Identities = 15/32 (46%), Positives = 18/32 (56%), Gaps = 4/32 (12%)
 Frame = +2

Query: 320  NKPLSDL----IHLVKPHIRELVEDSNLLKMW 403
            N+ L DL    IHLVKP++    E  N LK W
Sbjct: 1072 NQELLDLLLFSIHLVKPNVETNDEVCNTLKAW 1103


>SPCC1235.04c |||FAD synthetase|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 265

 Score = 26.2 bits (55), Expect = 5.3
 Identities = 8/20 (40%), Positives = 13/20 (65%)
 Frame = +1

Query: 625 YLSLWLVMCEIRNRYCSLHD 684
           Y  +W ++ E   +YCSL+D
Sbjct: 177 YTEIWDLLLETNTKYCSLYD 196


>SPBC26H8.10 |dis3|rrp44|3'-5' exoribonuclease subunit Dis3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 970

 Score = 26.2 bits (55), Expect = 5.3
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = +2

Query: 293 VLPNGSVPCNKPLSDLIHLVKPH 361
           VLPNG+      ++D+ H VKP+
Sbjct: 523 VLPNGNYEVGVHIADVTHFVKPN 545


>SPAC17G8.02 |||uridine ribohydrolase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 330

 Score = 25.8 bits (54), Expect = 7.0
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = -1

Query: 781 NMCMVLMRLWPNIMTQHSMNV 719
           ++C V + LWP++ T  SM V
Sbjct: 258 DVCAVALALWPSLWTSRSMYV 278


>SPAC1420.01c ||SPAC56E4.08c|DUF1752 family
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 580

 Score = 25.4 bits (53), Expect = 9.3
 Identities = 12/42 (28%), Positives = 20/42 (47%)
 Frame = +2

Query: 416 IPKIEDGNNFGVSIQEDTLAEIQSVESEAAAFLIKSHDISYP 541
           IPK+ + N+   S  +     +   E+E A   IK+H  + P
Sbjct: 188 IPKVSNSNSSDTSTDDQAYLNVSVSENEHADRSIKTHSSAPP 229


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,235,707
Number of Sequences: 5004
Number of extensions: 68429
Number of successful extensions: 220
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 214
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 220
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 381366860
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)