Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1124
         (787 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_1572 + 38319544-38319849,38320427-38320513,38320584-383206...    31   1.4  
07_03_0435 + 18182657-18183509,18184477-18184574,18184663-181848...    29   3.2  
09_04_0560 - 18519024-18519145,18519330-18519435,18519671-185199...    29   4.2  
03_03_0188 + 15269347-15270213                                         28   7.3  
09_04_0652 - 19227686-19227926,19229368-19232294                       28   9.7  
01_06_0356 + 28662956-28664043,28664255-28665139,28665227-286658...    28   9.7  

>01_06_1572 +
           38319544-38319849,38320427-38320513,38320584-38320676,
           38321491-38321567,38321974-38322562,38322701-38322794,
           38322884-38322996,38323438-38323524,38323842-38323964,
           38324058-38324192,38324437-38324484,38324993-38325094,
           38325321-38325716
          Length = 749

 Score = 30.7 bits (66), Expect = 1.4
 Identities = 22/73 (30%), Positives = 39/73 (53%), Gaps = 3/73 (4%)
 Frame = +1

Query: 517 QISRYFISRAKIVSKVAKYPH--IDDYRRAVRELDEKEYLSLWLVM-CEIRNRYCSLHDI 687
           +I+    SR    +KV ++     DD++ A    DEK YL    VM   + +R C L+D+
Sbjct: 509 EINEMIKSRVAAKAKVNEHHSGSADDFQIAN---DEKRYLKGKSVMDAALEDRICDLYDL 565

Query: 688 VIKNLEKIKKPRS 726
            ++ +++ K P+S
Sbjct: 566 YVEGMDEDKGPQS 578


>07_03_0435 +
           18182657-18183509,18184477-18184574,18184663-18184833,
           18185524-18185624,18185702-18185837,18186007-18186057,
           18186202-18186489,18186610-18186844,18186924-18187204,
           18187336-18187557
          Length = 811

 Score = 29.5 bits (63), Expect = 3.2
 Identities = 12/24 (50%), Positives = 14/24 (58%)
 Frame = +3

Query: 183 PIPTPPATSNNEPNAKRQRLDSSE 254
           P P PPATS   P A  + LD+ E
Sbjct: 81  PPPPPPATSRRPPRAPERELDTEE 104


>09_04_0560 -
           18519024-18519145,18519330-18519435,18519671-18519907,
           18521371-18521810,18523215-18525012
          Length = 900

 Score = 29.1 bits (62), Expect = 4.2
 Identities = 23/75 (30%), Positives = 35/75 (46%), Gaps = 2/75 (2%)
 Frame = +2

Query: 254 VSSNSTIEGTRVYVLPNGSVPCNKPLSDLIHLVKPHIREL--VEDSNLLKMWISFMIPKI 427
           +SS S +    V  LP+G  PC K  S LI  V P   E+  V    L  + ++     +
Sbjct: 299 ISSRSML--ATVLSLPSGLPPCIKSPSKLIEQVLPFAEEIVGVVMDELASLDMTVSSKNL 356

Query: 428 EDGNNFGVSIQEDTL 472
           ED +NF   +++  L
Sbjct: 357 EDLSNFFKVLRQQAL 371


>03_03_0188 + 15269347-15270213
          Length = 288

 Score = 28.3 bits (60), Expect = 7.3
 Identities = 21/50 (42%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
 Frame = +3

Query: 120 LLETSNFQNRNLSDVHQDLNIPIPTPPA-TSNNEPNAKRQRLDSSEYPAT 266
           LL TS+  +  +S        P P PPA TSNN+P  KR R  +S  P T
Sbjct: 56  LLHTSSSSSATMSP--SQAPPPHPPPPAPTSNNKPPKKRPR--ASRRPPT 101


>09_04_0652 - 19227686-19227926,19229368-19232294
          Length = 1055

 Score = 27.9 bits (59), Expect = 9.7
 Identities = 13/29 (44%), Positives = 19/29 (65%), Gaps = 2/29 (6%)
 Frame = +3

Query: 159 DVHQDLNIPIPT--PPATSNNEPNAKRQR 239
           D   DL++P+P+  PPA S + P AKR +
Sbjct: 367 DQFLDLSLPVPSRRPPAKSVSSPPAKRNK 395


>01_06_0356 +
           28662956-28664043,28664255-28665139,28665227-28665840,
           28665929-28666338
          Length = 998

 Score = 27.9 bits (59), Expect = 9.7
 Identities = 20/52 (38%), Positives = 24/52 (46%)
 Frame = +3

Query: 117 ELLETSNFQNRNLSDVHQDLNIPIPTPPATSNNEPNAKRQRLDSSEYPATQP 272
           EL   +N Q   LSD   DL+ PIP      NN PN  R +L S+      P
Sbjct: 161 ELANLNNLQILRLSD--NDLSGPIPQ--GLFNNTPNLSRIQLGSNRLTGAIP 208


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,762,263
Number of Sequences: 37544
Number of extensions: 396781
Number of successful extensions: 1187
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1142
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1187
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2115411120
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)