Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1124
         (787 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_12612| Best HMM Match : No HMM Matches (HMM E-Value=.)              35   0.065
SB_14816| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.80 
SB_38415| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.3  
SB_29273| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.6  
SB_28495| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.5  
SB_320| Best HMM Match : No HMM Matches (HMM E-Value=.)                28   7.5  
SB_899| Best HMM Match : Alpha_L_fucos (HMM E-Value=0)                 28   7.5  
SB_43077| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.9  

>SB_12612| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 231

 Score = 35.1 bits (77), Expect = 0.065
 Identities = 21/73 (28%), Positives = 37/73 (50%), Gaps = 9/73 (12%)
 Frame = +3

Query: 63  KGGXLIIKGFPEKIVKLNELLETSNFQNRNLSDVHQDLNIPIPTPPATSNN--------- 215
           K   ++ K FPE++ +L+ LL++  F    +  V  D  IPI  P +  +N         
Sbjct: 5   KAEEVVTKFFPERVTELDNLLKSGMFALNKIPKVQADSIIPISHPNSDHSNDILLKKSFL 64

Query: 216 EPNAKRQRLDSSE 254
           +P  K+++L +SE
Sbjct: 65  QPQNKKRKLSNSE 77


>SB_14816| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3760

 Score = 31.5 bits (68), Expect = 0.80
 Identities = 20/57 (35%), Positives = 30/57 (52%), Gaps = 3/57 (5%)
 Frame = +3

Query: 81   IKGFPEKIVKLNELLETSNFQNRNLSDVHQDLNIPIP---TPPATSNNEPNAKRQRL 242
            I+   EK+ K NE +E    +N  LSD+  +LN  I         S+++PN K Q+L
Sbjct: 1947 IEEMREKMRKANEEIEKILSKNSKLSDILNELNSGIENILNEETLSDSDPNVKLQKL 2003


>SB_38415| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 837

 Score = 29.1 bits (62), Expect = 4.3
 Identities = 12/33 (36%), Positives = 20/33 (60%)
 Frame = +1

Query: 184 QYQHHLRRQTMSQMLNVKDWTHRSIQQLNHRRN 282
           QYQ+ LR+   + +L  +   HR +Q+ N +RN
Sbjct: 725 QYQNALRKSGYNYLLKFEPTAHRPVQRRNGQRN 757


>SB_29273| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 585

 Score = 28.7 bits (61), Expect = 5.6
 Identities = 17/56 (30%), Positives = 30/56 (53%)
 Frame = +2

Query: 461 EDTLAEIQSVESEAAAFLIKSHDISYPGLK*YPKLPNTPTLMTTEELLGNWMKKNI 628
           ++T+ ++Q+  S   A L+ S  +     K  P  PNT T +T  ELL + ++ N+
Sbjct: 299 QNTIYKLQAAMSIRTANLV-SDMLPTGSAKTLPNRPNTSTFLTNPELLYSIVRNNV 353


>SB_28495| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 6753

 Score = 28.3 bits (60), Expect = 7.5
 Identities = 17/47 (36%), Positives = 23/47 (48%)
 Frame = +2

Query: 431  DGNNFGVSIQEDTLAEIQSVESEAAAFLIKSHDISYPGLK*YPKLPN 571
            DG+N  V + EDTL  I+      A+    SH  ++ GL  Y   PN
Sbjct: 1918 DGSNSVVQLGEDTLLLIKDFVKGIASSFTVSHADTHLGLLIYADSPN 1964


>SB_320| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1040

 Score = 28.3 bits (60), Expect = 7.5
 Identities = 10/30 (33%), Positives = 19/30 (63%)
 Frame = +3

Query: 192 TPPATSNNEPNAKRQRLDSSEYPATQP*KE 281
           TPP +S+N P  K   +D+ ++P+ +  K+
Sbjct: 53  TPPRSSSNHPRTKFGPIDNDQHPSVESFKQ 82


>SB_899| Best HMM Match : Alpha_L_fucos (HMM E-Value=0)
          Length = 1127

 Score = 28.3 bits (60), Expect = 7.5
 Identities = 15/71 (21%), Positives = 35/71 (49%), Gaps = 1/71 (1%)
 Frame = +1

Query: 481 TISRIRGSCFFDQISRYFISRAKIVSKVAKYPHIDDYRRAVRELDEKEYLSLWLVMCEIR 660
           T  ++     F   S   IS+ +++  VA  PH++ ++   +E  ++ Y+   +  C I 
Sbjct: 687 TYKQLNSYLTFTPASSLTISQRRLLG-VAYGPHVEVWKDPFQEKQKRPYMKHLIPSCSIH 745

Query: 661 N-RYCSLHDIV 690
           + ++C   D++
Sbjct: 746 SLQFCPYEDVL 756


>SB_43077| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1149

 Score = 27.9 bits (59), Expect = 9.9
 Identities = 12/35 (34%), Positives = 23/35 (65%), Gaps = 1/35 (2%)
 Frame = +3

Query: 630 VTL-VGNVRDPQSLLLTPRHCHQKLRED*KTTFIE 731
           VTL  GN+ +  ++L+T +H H++L+ D    ++E
Sbjct: 492 VTLPTGNITETPTVLVTVKHNHRRLKRDAAMAWVE 526


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,335,647
Number of Sequences: 59808
Number of extensions: 463567
Number of successful extensions: 1379
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1287
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1377
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2155861620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)