Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1124
         (787 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X98186-1|CAA66861.1|  269|Anopheles gambiae put. S3a ribosomal p...    28   0.28 
AF291654-1|AAG00600.1| 1340|Anopheles gambiae thioester-containi...    24   6.1  
AB090815-2|BAC57906.1|  973|Anopheles gambiae reverse transcript...    23   8.1  

>X98186-1|CAA66861.1|  269|Anopheles gambiae put. S3a ribosomal
           protein homologue protein.
          Length = 269

 Score = 28.3 bits (60), Expect = 0.28
 Identities = 23/87 (26%), Positives = 44/87 (50%)
 Frame = +1

Query: 463 GYTGRDTISRIRGSCFFDQISRYFISRAKIVSKVAKYPHIDDYRRAVRELDEKEYLSLWL 642
           G+T +D++S+ R +C+  Q S+    RAK+ + + +     D +  V +L          
Sbjct: 144 GFTIKDSMSQ-RKTCYA-QHSQIKNIRAKMTAIIKREITSTDLKGVVEKLLPDSIAKDIE 201

Query: 643 VMCEIRNRYCSLHDIVIKNLEKIKKPR 723
             C++      LHD+ I+ ++ +KKPR
Sbjct: 202 KACQV---VYPLHDVYIRKVKVLKKPR 225


>AF291654-1|AAG00600.1| 1340|Anopheles gambiae thioester-containing
           protein I protein.
          Length = 1340

 Score = 23.8 bits (49), Expect = 6.1
 Identities = 13/33 (39%), Positives = 18/33 (54%)
 Frame = -2

Query: 339 RSLSGLLQGTEPFGST*TRVPSMVELLDTPMSP 241
           +S+SGL+Q  +P       V   V LLDT + P
Sbjct: 119 KSISGLIQVDKPVFKPGDTVNFRVILLDTELKP 151


>AB090815-2|BAC57906.1|  973|Anopheles gambiae reverse transcriptase
           protein.
          Length = 973

 Score = 23.4 bits (48), Expect = 8.1
 Identities = 14/42 (33%), Positives = 24/42 (57%), Gaps = 2/42 (4%)
 Frame = +1

Query: 661 NRYCSLHDIVIKNLEKIKKPRSSNAESLY*AIISLV--PYTC 780
           NRYC++  I +KN        S+N E+++ A+  ++  PY C
Sbjct: 536 NRYCAIVTIDVKNAF-----NSANWEAIHAALSKMMIPPYLC 572


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 796,551
Number of Sequences: 2352
Number of extensions: 15867
Number of successful extensions: 30
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 28
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 30
length of database: 563,979
effective HSP length: 63
effective length of database: 415,803
effective search space used: 82328994
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)