Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--1124
(787 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AL161712-6|CAC70141.1| 248|Caenorhabditis elegans Hypothetical ... 115 3e-26
U00065-3|AAK68286.3| 981|Caenorhabditis elegans Hypothetical pr... 29 2.9
Z77133-7|CAB00865.2| 735|Caenorhabditis elegans Hypothetical pr... 29 5.0
Z68316-1|CAA92680.1| 213|Caenorhabditis elegans Hypothetical pr... 29 5.0
U29244-10|AAC71091.2| 908|Caenorhabditis elegans Hypothetical p... 29 5.0
AL008868-4|CAO82021.1| 735|Caenorhabditis elegans Hypothetical ... 29 5.0
AC084158-1|AAK68563.2| 1256|Caenorhabditis elegans Hypothetical ... 28 6.6
AC024806-3|AAP13749.1| 363|Caenorhabditis elegans Serpentine re... 28 8.7
>AL161712-6|CAC70141.1| 248|Caenorhabditis elegans Hypothetical
protein Y66D12A.9 protein.
Length = 248
Score = 115 bits (277), Expect = 3e-26
Identities = 48/95 (50%), Positives = 75/95 (78%), Gaps = 5/95 (5%)
Frame = +1
Query: 478 DTISRIRG-----SCFFDQISRYFISRAKIVSKVAKYPHIDDYRRAVRELDEKEYLSLWL 642
+T+S +R + F DQ+SRYF +R K+++K+AKYPH+DDYRRA+ ++DEK+++++ L
Sbjct: 154 ETLSEVRNVESEAASFLDQMSRYFTTRGKLITKIAKYPHVDDYRRAILDMDEKQFINIRL 213
Query: 643 VMCEIRNRYCSLHDIVIKNLEKIKKPRSSNAESLY 747
V+ E+RN + +LHD+++KN EKIK PR+SN E LY
Sbjct: 214 VVLEMRNHFSTLHDMIMKNYEKIKVPRTSNTEHLY 248
Score = 105 bits (251), Expect = 5e-23
Identities = 44/80 (55%), Positives = 65/80 (81%)
Frame = +2
Query: 275 EGTRVYVLPNGSVPCNKPLSDLIHLVKPHIRELVEDSNLLKMWISFMIPKIEDGNNFGVS 454
+G ++ +G+VPCN+ L+ L+ LV+P +R+ VE N +KMWI+ +IP+IEDGNNFGV
Sbjct: 91 KGAPIFAFSSGTVPCNENLAQLMDLVRPKLRDAVEQCNNVKMWITLLIPRIEDGNNFGVG 150
Query: 455 IQEDTLAEIQSVESEAAAFL 514
IQE+TL+E+++VESEAA+FL
Sbjct: 151 IQEETLSEVRNVESEAASFL 170
Score = 41.1 bits (92), Expect = 9e-04
Identities = 22/61 (36%), Positives = 37/61 (60%), Gaps = 4/61 (6%)
Frame = +3
Query: 75 LIIKGFPEKIVKLNELLETSNFQNRNLSDVHQD--LNIPIPTP--PATSNNEPNAKRQRL 242
L+ + FP+K+++ + LL++ L+++ D LNIPIP T ++EP KRQR+
Sbjct: 27 LVKEEFPKKVIEFDALLKSPKLSYDRLAEILPDKSLNIPIPDALNGTTDSDEPAVKRQRV 86
Query: 243 D 245
D
Sbjct: 87 D 87
>U00065-3|AAK68286.3| 981|Caenorhabditis elegans Hypothetical
protein D1044.8 protein.
Length = 981
Score = 29.5 bits (63), Expect = 2.9
Identities = 21/58 (36%), Positives = 31/58 (53%)
Frame = +1
Query: 535 ISRAKIVSKVAKYPHIDDYRRAVRELDEKEYLSLWLVMCEIRNRYCSLHDIVIKNLEK 708
IS KI+ + ++P+I YRR E L++VM I+ CSL D++I EK
Sbjct: 508 ISEVKIIKQQLRHPNIVRYRRIFVENHR-----LYIVMDLIQG--CSLRDLIITMKEK 558
>Z77133-7|CAB00865.2| 735|Caenorhabditis elegans Hypothetical
protein K03A11.1 protein.
Length = 735
Score = 28.7 bits (61), Expect = 5.0
Identities = 12/28 (42%), Positives = 16/28 (57%)
Frame = +3
Query: 141 QNRNLSDVHQDLNIPIPTPPATSNNEPN 224
QN N+S+VH ++I PT NN N
Sbjct: 124 QNMNISNVHNGVHISTPTENLAENNANN 151
>Z68316-1|CAA92680.1| 213|Caenorhabditis elegans Hypothetical
protein K08E4.2 protein.
Length = 213
Score = 28.7 bits (61), Expect = 5.0
Identities = 17/56 (30%), Positives = 32/56 (57%), Gaps = 4/56 (7%)
Frame = +1
Query: 610 LDEKEYLSLWLVMCEIRNRYCSLHDIVIKN----LEKIKKPRSSNAESLY*AIISL 765
+D ++YL W +C + + ++ V+K+ LEK+ + RSS+ +S Y II +
Sbjct: 27 VDLEQYLLFWEHVCNVMCSWGTIFSFVVKDVTAKLEKLTQMRSSDPDS-YRTIIGM 81
>U29244-10|AAC71091.2| 908|Caenorhabditis elegans Hypothetical
protein ZK1248.10 protein.
Length = 908
Score = 28.7 bits (61), Expect = 5.0
Identities = 17/52 (32%), Positives = 25/52 (48%)
Frame = +3
Query: 108 KLNELLETSNFQNRNLSDVHQDLNIPIPTPPATSNNEPNAKRQRLDSSEYPA 263
K + L+ S+ RN S V ++ + P P PP S +P + Q L E A
Sbjct: 123 KSDSSLDISSLTGRNSSSVLEECSSPSPVPPPRS-PKPKKRTQFLTEEETDA 173
>AL008868-4|CAO82021.1| 735|Caenorhabditis elegans Hypothetical
protein K03A11.1 protein.
Length = 735
Score = 28.7 bits (61), Expect = 5.0
Identities = 12/28 (42%), Positives = 16/28 (57%)
Frame = +3
Query: 141 QNRNLSDVHQDLNIPIPTPPATSNNEPN 224
QN N+S+VH ++I PT NN N
Sbjct: 124 QNMNISNVHNGVHISTPTENLAENNANN 151
>AC084158-1|AAK68563.2| 1256|Caenorhabditis elegans Hypothetical
protein Y69A2AR.19 protein.
Length = 1256
Score = 28.3 bits (60), Expect = 6.6
Identities = 12/29 (41%), Positives = 19/29 (65%)
Frame = -2
Query: 417 IINEIHILSKFESSTSSLMCGLTRCIRSL 331
++NEI +LS + SS+M L +C R+L
Sbjct: 421 LVNEISLLSSDSAEMSSVMAELDKCSRTL 449
>AC024806-3|AAP13749.1| 363|Caenorhabditis elegans Serpentine
receptor, class w protein40 protein.
Length = 363
Score = 27.9 bits (59), Expect = 8.7
Identities = 12/24 (50%), Positives = 18/24 (75%)
Frame = +3
Query: 321 TSHSVILYILLSHTLGNLLKIQTY 392
TSHS++L +LS ++ NLLKI +
Sbjct: 112 TSHSMLLLAVLSSSIRNLLKISMW 135
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,630,250
Number of Sequences: 27780
Number of extensions: 371898
Number of successful extensions: 1164
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1114
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1163
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1903721438
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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