Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1124
         (787 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.          24   1.8  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              24   1.8  
AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    21   9.8  
AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.     21   9.8  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    21   9.8  
AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive...    21   9.8  

>DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.
          Length = 495

 Score = 23.8 bits (49), Expect = 1.8
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = -2

Query: 411 NEIHILSKFESSTSSLMCGLTR 346
           N +HILSK++  TS+ +  L R
Sbjct: 24  NSVHILSKYQLITSTTLNWLPR 45


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 23.8 bits (49), Expect = 1.8
 Identities = 14/39 (35%), Positives = 20/39 (51%)
 Frame = -2

Query: 387 FESSTSSLMCGLTRCIRSLSGLLQGTEPFGST*TRVPSM 271
           ++  T   + G TR + +  G L  TEP GS   + PSM
Sbjct: 179 YQCRTKHRLTGETR-LSATKGRLVITEPVGSVRPKFPSM 216


>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 21.4 bits (43), Expect = 9.8
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = +3

Query: 48  RFFETKGGXLIIKGF 92
           RFFE K G ++ +GF
Sbjct: 256 RFFEEKDGQVLWEGF 270


>AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.
          Length = 602

 Score = 21.4 bits (43), Expect = 9.8
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = +3

Query: 48  RFFETKGGXLIIKGF 92
           RFFE K G ++ +GF
Sbjct: 256 RFFEEKDGQVLWEGF 270


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 21.4 bits (43), Expect = 9.8
 Identities = 9/18 (50%), Positives = 10/18 (55%)
 Frame = +3

Query: 195 PPATSNNEPNAKRQRLDS 248
           PP T   E N K+  LDS
Sbjct: 317 PPETEEEEENDKKLDLDS 334


>AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive
           opsin protein.
          Length = 371

 Score = 21.4 bits (43), Expect = 9.8
 Identities = 11/39 (28%), Positives = 19/39 (48%)
 Frame = +3

Query: 93  PEKIVKLNELLETSNFQNRNLSDVHQDLNIPIPTPPATS 209
           P+  ++L + L     Q + +SD        + TPPA+S
Sbjct: 333 PKYRLELQKRLPWLELQEKPISDSTSTTTETVNTPPASS 371


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 216,490
Number of Sequences: 438
Number of extensions: 4875
Number of successful extensions: 9
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24760908
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)