Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1124
         (787 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g80370.1 68414.m09408 cyclin, putative similar to cyclin A2 [...    29   4.6  
At5g58890.1 68418.m07378 MADS-box family protein various predict...    28   6.1  
At3g15520.1 68416.m01967 peptidyl-prolyl cis-trans isomerase TLP...    28   6.1  
At3g49430.1 68416.m05403 pre-mRNA splicing factor, putative stro...    28   8.1  
At3g05470.1 68416.m00599 formin homology 2 domain-containing pro...    28   8.1  
At1g65390.2 68414.m07419 disease resistance protein (TIR class),...    28   8.1  
At1g65390.1 68414.m07420 disease resistance protein (TIR class),...    28   8.1  

>At1g80370.1 68414.m09408 cyclin, putative similar to cyclin A2
           [Lycopersicon esculentum] GI:5420276; contains Pfam
           profiles PF00134: Cyclin, N-terminal domain, PF02984:
           Cyclin, C-terminal domain
          Length = 461

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 13/33 (39%), Positives = 21/33 (63%)
 Frame = +1

Query: 643 VMCEIRNRYCSLHDIVIKNLEKIKKPRSSNAES 741
           V CE  N Y S   + ++N+++IKK R S++ S
Sbjct: 79  VTCE--NSYTSCFSVAVENIKQIKKGRQSSSSS 109


>At5g58890.1 68418.m07378 MADS-box family protein various predicted
           proteins, Oryza sativa and Arabidopsis thaliana
          Length = 294

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 19/61 (31%), Positives = 28/61 (45%), Gaps = 6/61 (9%)
 Frame = +2

Query: 347 LVKPHIRELVEDSNLLKMWI------SFMIPKIEDGNNFGVSIQEDTLAEIQSVESEAAA 508
           L+ PH  ++  D NL++ W       S M+ K  DG  F +  QE      + V S +A 
Sbjct: 200 LISPHDGQIQMDPNLMEKWTDLALTQSLMMSKGNDGTQF-MQRQEQPYYNREQVVSRSAG 258

Query: 509 F 511
           F
Sbjct: 259 F 259


>At3g15520.1 68416.m01967 peptidyl-prolyl cis-trans isomerase TLP38,
           chloroplast / thylakoid lumen PPIase of 38 kDa /
           cyclophilin / rotamase cyclophylin-type; identical to
           SP|P82869 Thylakoid lumenal 38 kDa protein, chloroplast
           precursor (P38) {Arabidopsis thaliana}
          Length = 466

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 13/59 (22%), Positives = 33/59 (55%)
 Frame = +2

Query: 371 LVEDSNLLKMWISFMIPKIEDGNNFGVSIQEDTLAEIQSVESEAAAFLIKSHDISYPGL 547
           L++    L+  I+ +  +  D  + G++   DT+A+++ +++   +FL+    ++YP L
Sbjct: 203 LIDGKGGLQALITSIKKQDPDKVSLGLAASLDTVADLELLQASGLSFLLPQQYLNYPRL 261


>At3g49430.1 68416.m05403 pre-mRNA splicing factor, putative strong
           similarity to SP|O22315 Pre-mRNA splicing factor SF2
           (SR1 protein) {Arabidopsis thaliana}
          Length = 300

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 10/26 (38%), Positives = 17/26 (65%)
 Frame = +1

Query: 562 VAKYPHIDDYRRAVRELDEKEYLSLW 639
           V  Y + DD + A+R+LD+ E+ + W
Sbjct: 163 VVDYTNYDDMKYAIRKLDDTEFRNPW 188


>At3g05470.1 68416.m00599 formin homology 2 domain-containing
           protein / FH2 domain-containing protein contains formin
           homology 2 domain, Pfam:PF02181
          Length = 884

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 21/75 (28%), Positives = 32/75 (42%)
 Frame = +3

Query: 48  RFFETKGGXLIIKGFPEKIVKLNELLETSNFQNRNLSDVHQDLNIPIPTPPATSNNEPNA 227
           R+   +GG  I     EK   L +L++ S  + RNL++       P P+P    N  P  
Sbjct: 53  RYAGEEGGEKIKLRVLEKFRALLDLIKPSTSRRRNLAESASFSPWPAPSPSPFPNGGP-- 110

Query: 228 KRQRLDSSEYPATQP 272
               ++S  YP   P
Sbjct: 111 ----IESPAYPPAPP 121


>At1g65390.2 68414.m07419 disease resistance protein (TIR class),
           putative domain signature TIR exists, suggestive of a
           disease resistance protein.
          Length = 297

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 14/47 (29%), Positives = 24/47 (51%)
 Frame = +3

Query: 84  KGFPEKIVKLNELLETSNFQNRNLSDVHQDLNIPIPTPPATSNNEPN 224
           + F + IVK  + ++ + FQ RN    +QD ++P      T +  PN
Sbjct: 173 RDFVKSIVKAVKKVQKNFFQRRNGEIEYQDFSVPACKLTITMHESPN 219


>At1g65390.1 68414.m07420 disease resistance protein (TIR class),
           putative domain signature TIR exists, suggestive of a
           disease resistance protein.
          Length = 411

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 14/47 (29%), Positives = 24/47 (51%)
 Frame = +3

Query: 84  KGFPEKIVKLNELLETSNFQNRNLSDVHQDLNIPIPTPPATSNNEPN 224
           + F + IVK  + ++ + FQ RN    +QD ++P      T +  PN
Sbjct: 173 RDFVKSIVKAVKKVQKNFFQRRNGEIEYQDFSVPACKLTITMHESPN 219


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,520,106
Number of Sequences: 28952
Number of extensions: 340947
Number of successful extensions: 1014
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 982
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1013
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1765546400
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)