Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--1123
(296 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAP7G5.05 |rpl1002|rpl10-2, rpl10|60S ribosomal protein L10|Sch... 79 1e-16
SPBC18E5.04 |rpl1001|rpl10-1, rpl10|60S ribosomal protein L10|Sc... 79 1e-16
SPBC1348.02 |||S. pombe specific 5Tm protein family|Schizosaccha... 29 0.15
SPBPB2B2.19c |||S. pombe specific 5Tm protein family|Schizosacch... 29 0.15
SPAC977.01 |||S. pombe specific 5Tm protein family|Schizosacchar... 29 0.15
SPAC750.05c |||S. pombe specific 5Tm protein family|Schizosaccha... 29 0.15
SPBC4C3.08 |mug136||acetylglucosaminyltransferase|Schizosaccharo... 26 1.0
SPBC577.09 |||ERCC-8 homolog |Schizosaccharomyces pombe|chr 2|||... 26 1.0
SPAC25A8.01c ||snf2SR|fun thirty related protein Fft3|Schizosacc... 25 1.8
SPAC926.07c |dlc2||dynein light chain Dlc2|Schizosaccharomyces p... 24 5.5
SPAC8C9.15c |tif225||translation initiation factor eIF2B epsilon... 24 5.5
SPCC132.04c |||NAD-dependent glutamate dehydrogenase |Schizosacc... 23 9.6
SPCC553.01c ||SPCC736.01c|meiotic chromosome segregation protein... 23 9.6
SPAC1B2.05 |mcm5|nda4, SPAC3F10.01|MCM complex subunit Mcm5|Schi... 23 9.6
SPBC3E7.10 |fma1||methionine aminopeptidase Fma1 |Schizosaccharo... 23 9.6
SPAC4G9.09c |arg11||N-acetyl-gamma-glutamyl-phosphate reductase/... 23 9.6
SPCC965.05c |thp1||uracil DNA N-glycosylase Thp1 |Schizosaccharo... 23 9.6
>SPAP7G5.05 |rpl1002|rpl10-2, rpl10|60S ribosomal protein
L10|Schizosaccharomyces pombe|chr 1|||Manual
Length = 221
Score = 79.4 bits (187), Expect = 1e-16
Identities = 34/69 (49%), Positives = 48/69 (69%)
Frame = +1
Query: 1 VRSSDRWKAQVIEALRRAKFKFPGRQKIYVSKKWGFTKYERDEFEKLREEGRLANDGCIV 180
VR+ D +A IEALRR ++KFPG+Q+I VSKKWGF++Y RDE+ + R G + DGC
Sbjct: 138 VRTKDSSRATAIEALRRCQYKFPGQQRIIVSKKWGFSQYARDEYIEKRSRGEIIPDGCYA 197
Query: 181 QYRPEHGPL 207
++ + G L
Sbjct: 198 KFLNKRGSL 206
>SPBC18E5.04 |rpl1001|rpl10-1, rpl10|60S ribosomal protein
L10|Schizosaccharomyces pombe|chr 2|||Manual
Length = 221
Score = 79.4 bits (187), Expect = 1e-16
Identities = 34/69 (49%), Positives = 48/69 (69%)
Frame = +1
Query: 1 VRSSDRWKAQVIEALRRAKFKFPGRQKIYVSKKWGFTKYERDEFEKLREEGRLANDGCIV 180
VR+ D +A IEALRR ++KFPG+Q+I VSKKWGF++Y RDE+ + R G + DGC
Sbjct: 138 VRTKDSSRATAIEALRRCQYKFPGQQRIIVSKKWGFSQYARDEYIEKRSRGEIIPDGCYA 197
Query: 181 QYRPEHGPL 207
++ + G L
Sbjct: 198 KFLNKRGSL 206
>SPBC1348.02 |||S. pombe specific 5Tm protein
family|Schizosaccharomyces pombe|chr 2|||Manual
Length = 344
Score = 29.1 bits (62), Expect = 0.15
Identities = 13/45 (28%), Positives = 23/45 (51%)
Frame = -3
Query: 162 SEAALFTQLLKLITFILCETPLL*YVDLLTSGELELGTAQSLDDL 28
S+A F ++L FI C +P+L Y+ + G + + + DL
Sbjct: 263 SKARFFRRMLNAFIFIFCASPMLHYLSNIIFGNFDYRLSVIIGDL 307
>SPBPB2B2.19c |||S. pombe specific 5Tm protein
family|Schizosaccharomyces pombe|chr 2|||Manual
Length = 344
Score = 29.1 bits (62), Expect = 0.15
Identities = 13/45 (28%), Positives = 23/45 (51%)
Frame = -3
Query: 162 SEAALFTQLLKLITFILCETPLL*YVDLLTSGELELGTAQSLDDL 28
S+A F ++L FI C +P+L Y+ + G + + + DL
Sbjct: 263 SKARFFRRMLNAFIFIFCASPMLHYLSNIIFGNFDYRLSVIIGDL 307
>SPAC977.01 |||S. pombe specific 5Tm protein
family|Schizosaccharomyces pombe|chr 1||Partial|Manual
Length = 316
Score = 29.1 bits (62), Expect = 0.15
Identities = 13/45 (28%), Positives = 23/45 (51%)
Frame = -3
Query: 162 SEAALFTQLLKLITFILCETPLL*YVDLLTSGELELGTAQSLDDL 28
S+A F ++L FI C +P+L Y+ + G + + + DL
Sbjct: 235 SKARFFRRMLNAFIFIFCASPMLHYLSNIIFGNFDYRLSVIIGDL 279
>SPAC750.05c |||S. pombe specific 5Tm protein
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 344
Score = 29.1 bits (62), Expect = 0.15
Identities = 13/45 (28%), Positives = 23/45 (51%)
Frame = -3
Query: 162 SEAALFTQLLKLITFILCETPLL*YVDLLTSGELELGTAQSLDDL 28
S+A F ++L FI C +P+L Y+ + G + + + DL
Sbjct: 263 SKARFFRRMLNAFIFIFCASPMLHYLSNIIFGNFDYRLSVIIGDL 307
>SPBC4C3.08 |mug136||acetylglucosaminyltransferase|Schizosaccharomyc
es pombe|chr 2|||Manual
Length = 372
Score = 26.2 bits (55), Expect = 1.0
Identities = 14/53 (26%), Positives = 26/53 (49%)
Frame = +2
Query: 2 CALVTGGRHRSSRLCAVPSSSSPDVKRSTYQRSGVSQSMNVMSLRSCVKRAAS 160
C L+T C + + SP+++RS Y +G++ S + + RAA+
Sbjct: 17 CLLITLSIILLGWQCVLLYNHSPEIQRSVYTLTGLAPSSKMAFVTMLTVRAAN 69
>SPBC577.09 |||ERCC-8 homolog |Schizosaccharomyces pombe|chr
2|||Manual
Length = 404
Score = 26.2 bits (55), Expect = 1.0
Identities = 19/75 (25%), Positives = 31/75 (41%)
Frame = +2
Query: 2 CALVTGGRHRSSRLCAVPSSSSPDVKRSTYQRSGVSQSMNVMSLRSCVKRAASLMTAALC 181
C + T R S RLC D++ +Y S + NV+++ C K L + +
Sbjct: 160 CLIATAYRSSSIRLC--------DMQSGSYTHSLSGHTGNVLAVDWCPKNEFVLASGSAD 211
Query: 182 STARNMDLSTLGGRF 226
T R D+ + F
Sbjct: 212 GTCRLWDIRKVSSSF 226
>SPAC25A8.01c ||snf2SR|fun thirty related protein
Fft3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 922
Score = 25.4 bits (53), Expect = 1.8
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = +2
Query: 32 SSRLCAVPSSSSPDVKRSTYQRSGVS 109
SS + P+S SPD+K YQ G++
Sbjct: 371 SSFITTPPASFSPDIKLQDYQIIGIN 396
>SPAC926.07c |dlc2||dynein light chain Dlc2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 85
Score = 23.8 bits (49), Expect = 5.5
Identities = 12/34 (35%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
Frame = -2
Query: 148 LHAASQTHHVHTL*NP-TSLIRRSFDVRGT*TWH 50
+HAA Q T+ + I+R FD + + TWH
Sbjct: 18 IHAAVQAMEKFTIEKDIAAFIKREFDKKFSPTWH 51
>SPAC8C9.15c |tif225||translation initiation factor eIF2B epsilon
subunit|Schizosaccharomyces pombe|chr 1|||Manual
Length = 678
Score = 23.8 bits (49), Expect = 5.5
Identities = 10/29 (34%), Positives = 19/29 (65%)
Frame = +2
Query: 86 TYQRSGVSQSMNVMSLRSCVKRAASLMTA 172
+YQR + + +V+ RSC+ +A +L+ A
Sbjct: 307 SYQRHQIYKEEDVVLARSCIIKARTLIGA 335
>SPCC132.04c |||NAD-dependent glutamate dehydrogenase
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1106
Score = 23.0 bits (47), Expect = 9.6
Identities = 18/66 (27%), Positives = 30/66 (45%)
Frame = -3
Query: 252 RLYIEDLSLNLPPSVERSMFRAVLHNAAVISEAALFTQLLKLITFILCETPLL*YVDLLT 73
R Y+E S N + + + NAAV S LF+Q+ + + + C P + L
Sbjct: 348 RTYVEQFS-NGVTIISYNFKPELFKNAAVTSINELFSQITREASLLYC-LPSTDFQPLFV 405
Query: 72 SGELEL 55
S +L +
Sbjct: 406 SEKLSI 411
>SPCC553.01c ||SPCC736.01c|meiotic chromosome segregation
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 715
Score = 23.0 bits (47), Expect = 9.6
Identities = 15/30 (50%), Positives = 17/30 (56%)
Frame = +2
Query: 50 VPSSSSPDVKRSTYQRSGVSQSMNVMSLRS 139
VPS SSP VK ++ G S S SLRS
Sbjct: 450 VPSFSSPLVKPASSSSFGRSHSHLGTSLRS 479
>SPAC1B2.05 |mcm5|nda4, SPAC3F10.01|MCM complex subunit
Mcm5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 720
Score = 23.0 bits (47), Expect = 9.6
Identities = 8/13 (61%), Positives = 12/13 (92%)
Frame = +1
Query: 124 DEFEKLREEGRLA 162
DEF+K+R+E R+A
Sbjct: 436 DEFDKMRDEDRVA 448
>SPBC3E7.10 |fma1||methionine aminopeptidase Fma1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 379
Score = 23.0 bits (47), Expect = 9.6
Identities = 10/28 (35%), Positives = 16/28 (57%)
Frame = +2
Query: 68 PDVKRSTYQRSGVSQSMNVMSLRSCVKR 151
P +KR Y ++GVS+S + +KR
Sbjct: 92 PHIKRPDYAKTGVSRSEQIEGRSFKLKR 119
>SPAC4G9.09c |arg11||N-acetyl-gamma-glutamyl-phosphate
reductase/acetylglutamate kinase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 885
Score = 23.0 bits (47), Expect = 9.6
Identities = 9/25 (36%), Positives = 14/25 (56%)
Frame = +1
Query: 100 WGFTKYERDEFEKLREEGRLANDGC 174
W + E ++ E LR R++N GC
Sbjct: 679 WQYGLPELNDREALRNSKRISNPGC 703
>SPCC965.05c |thp1||uracil DNA N-glycosylase Thp1
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 325
Score = 23.0 bits (47), Expect = 9.6
Identities = 9/20 (45%), Positives = 13/20 (65%)
Frame = +2
Query: 35 SRLCAVPSSSSPDVKRSTYQ 94
+ LCA PSSS D+++ Q
Sbjct: 209 TNLCARPSSSGADLRKEEMQ 228
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,121,250
Number of Sequences: 5004
Number of extensions: 19137
Number of successful extensions: 63
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 63
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 63
length of database: 2,362,478
effective HSP length: 62
effective length of database: 2,052,230
effective search space used: 73880280
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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