Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--1123
(296 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_01_0740 + 6243517-6243526,6244822-6245323,6245415-6245496,624... 80 4e-16
03_02_0897 - 12239375-12239458,12240035-12240116,12240213-122407... 79 5e-16
05_01_0490 + 4083768-4083775,4083845-4084336,4084441-4084522,408... 75 8e-15
09_03_0039 + 11799277-11799486,11799565-11799710,11800758-118008... 28 1.1
10_08_0840 + 20945899-20946085,20946369-20946478,20946857-20947369 28 1.5
01_07_0095 + 41053562-41053603,41054609-41054846,41055064-410553... 27 2.0
11_01_0053 - 401578-401824,401996-402079,402201-402388,402713-40... 27 2.6
09_03_0192 + 13344558-13344942,13345038-13345591 27 2.6
10_08_1058 + 22608852-22609172,22609257-22610651 27 3.5
08_02_0451 + 17297293-17297793,17297866-17298130,17298215-172984... 27 3.5
02_01_0254 - 1669461-1669590,1669833-1672318 27 3.5
08_02_0460 - 17427050-17427694 26 4.6
07_03_0604 + 19903654-19904598 26 4.6
06_03_0232 - 18507872-18508792 26 4.6
12_01_0696 + 5936869-5937068,5937705-5938179,5938240-5938665 26 6.0
08_02_1397 + 26744154-26744450,26745079-26745138,26745251-267453... 26 6.0
09_01_0063 - 956985-957059,957585-957699,959040-959221 25 8.0
08_02_1012 + 23550314-23551504 25 8.0
03_02_0602 + 9759055-9759223,9759305-9759455,9759548-9759593,975... 25 8.0
02_02_0479 - 10775382-10775656,10776513-10777535,10777725-107784... 25 8.0
>11_01_0740 +
6243517-6243526,6244822-6245323,6245415-6245496,
6245741-6245821
Length = 224
Score = 79.8 bits (188), Expect = 4e-16
Identities = 36/57 (63%), Positives = 43/57 (75%)
Frame = +1
Query: 37 EALRRAKFKFPGRQKIYVSKKWGFTKYERDEFEKLREEGRLANDGCIVQYRPEHGPL 207
EALRRAKFKFPGRQKI S+KWGFTK+ R+E+ KL+ EGR+ +DG Q HG L
Sbjct: 150 EALRRAKFKFPGRQKIIHSRKWGFTKFTREEYVKLKAEGRIMSDGVNAQLLGSHGRL 206
>03_02_0897 -
12239375-12239458,12240035-12240116,12240213-12240714,
12241150-12241303,12241458-12241629,12242237-12242443,
12242926-12243323
Length = 532
Score = 79.4 bits (187), Expect = 5e-16
Identities = 36/67 (53%), Positives = 45/67 (67%)
Frame = +1
Query: 1 VRSSDRWKAQVIEALRRAKFKFPGRQKIYVSKKWGFTKYERDEFEKLREEGRLANDGCIV 180
VR D A EALRRAKFKFPGRQ++ S KWGFT+++RDE+ KL+ EGR+ DG
Sbjct: 445 VRCRDANAAHAQEALRRAKFKFPGRQRVIFSAKWGFTRFKRDEYLKLKSEGRIVPDGVNA 504
Query: 181 QYRPEHG 201
+ HG
Sbjct: 505 KLLTRHG 511
>05_01_0490 +
4083768-4083775,4083845-4084336,4084441-4084522,
4086671-4087357,4087555-4087813,4088435-4088558,
4089474-4089564
Length = 580
Score = 75.4 bits (177), Expect = 8e-15
Identities = 32/45 (71%), Positives = 38/45 (84%)
Frame = +1
Query: 37 EALRRAKFKFPGRQKIYVSKKWGFTKYERDEFEKLREEGRLANDG 171
EALRRAKFKFPGRQKI S+KWGFTK+ RDE+ +L+ EGR+ DG
Sbjct: 146 EALRRAKFKFPGRQKIIESRKWGFTKFSRDEYVRLKSEGRIMPDG 190
>09_03_0039 +
11799277-11799486,11799565-11799710,11800758-11800860,
11800996-11801182,11801299-11801392,11801530-11801683,
11801963-11802067,11802151-11802267,11802688-11802801,
11803171-11803260,11803875-11804057,11809196-11809550,
11809574-11809643,11809993-11810167,11810251-11810351,
11810390-11810516,11810639-11810716,11811926-11812270
Length = 917
Score = 28.3 bits (60), Expect = 1.1
Identities = 10/42 (23%), Positives = 26/42 (61%)
Frame = -3
Query: 252 RLYIEDLSLNLPPSVERSMFRAVLHNAAVISEAALFTQLLKL 127
+++ +D + +LPP ++ + +V+HN + + + + LLK+
Sbjct: 685 QIFFDDRNTSLPPDTRKAAYLSVMHNVSSTNRSG-YDALLKI 725
>10_08_0840 + 20945899-20946085,20946369-20946478,20946857-20947369
Length = 269
Score = 27.9 bits (59), Expect = 1.5
Identities = 20/70 (28%), Positives = 33/70 (47%), Gaps = 1/70 (1%)
Frame = +1
Query: 22 KAQVIEA-LRRAKFKFPGRQKIYVSKKWGFTKYERDEFEKLREEGRLANDGCIVQYRPEH 198
KA +I+ RR + K+PG QK+ + G K +A+DG ++Q +
Sbjct: 151 KAGIIDMQFRRVRCKYPGGQKVTFHVEKGSNPNYLAVLVKF-----VADDGDVIQMDLQE 205
Query: 199 GPLDAWRKVQ 228
L AWR ++
Sbjct: 206 AGLPAWRPMK 215
>01_07_0095 +
41053562-41053603,41054609-41054846,41055064-41055312,
41055419-41055469,41056044-41056256,41056305-41056367,
41056422-41056474,41056953-41057067,41057150-41057404,
41057531-41058618
Length = 788
Score = 27.5 bits (58), Expect = 2.0
Identities = 22/85 (25%), Positives = 41/85 (48%), Gaps = 5/85 (5%)
Frame = +2
Query: 29 RSSRLCAVPSSSSPDVKRSTYQRSG-VSQSMNVMSLRSCVKRAAS----LMTAALCSTAR 193
R ++L +P+ S D + STY R+G S+ ++ LR +++ + L+ LC +
Sbjct: 105 RHAKLSFLPNQQSADEELSTYYRNGFTSRHGSLPWLRRFMEKHKNARTVLLLIVLCGASM 164
Query: 194 NMDLSTLGGRFRLRSSMYNLTIHST 268
+ L + SSM L + +T
Sbjct: 165 MIGDGILTPAISVLSSMSGLKVRAT 189
>11_01_0053 -
401578-401824,401996-402079,402201-402388,402713-402779,
402905-403105,403712-403789,404358-404374
Length = 293
Score = 27.1 bits (57), Expect = 2.6
Identities = 13/40 (32%), Positives = 21/40 (52%)
Frame = +1
Query: 76 QKIYVSKKWGFTKYERDEFEKLREEGRLANDGCIVQYRPE 195
+KIY S WGFT E++ + +E + I + +PE
Sbjct: 2 EKIYRSHLWGFTANEKEAYSGENDERQQILQLIIEEKQPE 41
>09_03_0192 + 13344558-13344942,13345038-13345591
Length = 312
Score = 27.1 bits (57), Expect = 2.6
Identities = 21/71 (29%), Positives = 34/71 (47%), Gaps = 4/71 (5%)
Frame = +1
Query: 46 RRAKFKFPGRQKIY----VSKKWGFTKYERDEFEKLREEGRLANDGCIVQYRPEHGPLDA 213
R A+ ++P +Y +++K F +D LR+ A D + Y+ GPLDA
Sbjct: 92 RLARSEYPKHHYVYPMAGLNEKVDFLCKAKDLMHHLRKSK--ATDWALGPYKSVFGPLDA 149
Query: 214 WRKVQAEILNV 246
+ EIL+V
Sbjct: 150 QTQDGMEILDV 160
>10_08_1058 + 22608852-22609172,22609257-22610651
Length = 571
Score = 26.6 bits (56), Expect = 3.5
Identities = 15/34 (44%), Positives = 17/34 (50%), Gaps = 2/34 (5%)
Frame = +2
Query: 137 SCVKRAASL--MTAALCSTARNMDLSTLGGRFRL 232
+CV AASL MT MD GGRFR+
Sbjct: 343 TCVLYAASLGQMTTTFIQQGMAMDTRVFGGRFRV 376
>08_02_0451 +
17297293-17297793,17297866-17298130,17298215-17298410,
17298437-17298864,17298923-17299200,17299298-17299588
Length = 652
Score = 26.6 bits (56), Expect = 3.5
Identities = 15/34 (44%), Positives = 19/34 (55%)
Frame = +2
Query: 137 SCVKRAASLMTAALCSTARNMDLSTLGGRFRLRS 238
S +KR A + AA CST R M G + RLR+
Sbjct: 548 SAIKRLAVRILAAHCSTERTMRACLDGFKNRLRA 581
>02_01_0254 - 1669461-1669590,1669833-1672318
Length = 871
Score = 26.6 bits (56), Expect = 3.5
Identities = 25/83 (30%), Positives = 36/83 (43%), Gaps = 3/83 (3%)
Frame = -3
Query: 255 VRLYIEDLSLNLPPSVERSMFRAVLHNAAVISEAALFTQLLKLITFILCETPLL*YVDLL 76
+RL++ S PPS + F A + AA +AAL LL+ + + P L +
Sbjct: 26 LRLFLHLTSAASPPSPHSTSFLARILAAAAAHDAALLPSLLRHLLSLPDPAPHLLALLSS 85
Query: 75 TSGELELGTAQSLD---DLCLPP 16
+S L L SL LC P
Sbjct: 86 SSSPLRLPLGFSLSAFRSLCALP 108
>08_02_0460 - 17427050-17427694
Length = 214
Score = 26.2 bits (55), Expect = 4.6
Identities = 9/19 (47%), Positives = 14/19 (73%)
Frame = +1
Query: 214 WRKVQAEILNV*SDNTFYS 270
WRK +++LN+ SD F+S
Sbjct: 89 WRKPTSDVLNINSDGAFHS 107
>07_03_0604 + 19903654-19904598
Length = 314
Score = 26.2 bits (55), Expect = 4.6
Identities = 10/24 (41%), Positives = 13/24 (54%)
Frame = -2
Query: 193 PGGTAQCSRH*RGGPLHAASQTHH 122
PGG + R G P+H A + HH
Sbjct: 80 PGGRRRRPRRVEGAPVHRARRLHH 103
>06_03_0232 - 18507872-18508792
Length = 306
Score = 26.2 bits (55), Expect = 4.6
Identities = 22/65 (33%), Positives = 31/65 (47%), Gaps = 2/65 (3%)
Frame = +2
Query: 11 VTGGRHRSSRLCAVPSSSSPDVKRSTYQRS-GVSQSMNVMSLRSC-VKRAASLMTAALCS 184
+ GRH R A P SSSP + RS S G+S S + S S +K+A +
Sbjct: 133 IKDGRHNPFRPRA-PPSSSPVLPRSVPSTSAGLSSSASPSSSSSSPIKKALQAIFCMCAK 191
Query: 185 TARNM 199
TA+ +
Sbjct: 192 TAKKV 196
>12_01_0696 + 5936869-5937068,5937705-5938179,5938240-5938665
Length = 366
Score = 25.8 bits (54), Expect = 6.0
Identities = 15/47 (31%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
Frame = +2
Query: 8 LVTG-GRHRSSRLCAVPSSSSPDVKRSTYQRSGVSQSMNVMSLRSCV 145
+V+G GRH ++R+C + ++ D R RS S +V+ L C+
Sbjct: 117 VVSGAGRHLATRICTIVAACGLDALR----RSAPYASASVLPLAPCI 159
>08_02_1397 +
26744154-26744450,26745079-26745138,26745251-26745331,
26745437-26745637,26745746-26745841,26746479-26746675,
26746774-26747005
Length = 387
Score = 25.8 bits (54), Expect = 6.0
Identities = 12/33 (36%), Positives = 19/33 (57%)
Frame = +2
Query: 125 MSLRSCVKRAASLMTAALCSTARNMDLSTLGGR 223
M+L + RAA+L A C++A + + GGR
Sbjct: 1 MALPAATARAAALCRIAACASASSAAAAATGGR 33
>09_01_0063 - 956985-957059,957585-957699,959040-959221
Length = 123
Score = 25.4 bits (53), Expect = 8.0
Identities = 10/14 (71%), Positives = 12/14 (85%)
Frame = +2
Query: 29 RSSRLCAVPSSSSP 70
R+ LCA+PSSSSP
Sbjct: 22 RTRHLCALPSSSSP 35
>08_02_1012 + 23550314-23551504
Length = 396
Score = 25.4 bits (53), Expect = 8.0
Identities = 10/18 (55%), Positives = 12/18 (66%)
Frame = +2
Query: 44 CAVPSSSSPDVKRSTYQR 97
CA P+S PDV S Y+R
Sbjct: 79 CADPASRDPDVVHSAYRR 96
>03_02_0602 +
9759055-9759223,9759305-9759455,9759548-9759593,
9759974-9760033,9760519-9760555,9761268-9761347,
9761413-9761516,9761613-9761673,9762962-9763019,
9763866-9763918,9764357-9765320,9766131-9766185,
9767223-9768786
Length = 1133
Score = 25.4 bits (53), Expect = 8.0
Identities = 14/37 (37%), Positives = 19/37 (51%)
Frame = -3
Query: 222 LPPSVERSMFRAVLHNAAVISEAALFTQLLKLITFIL 112
L SV R+VLH+ VIS A L +L+ +L
Sbjct: 282 LRKSVSLPCIRSVLHSTCVISAMAAAAALNRLLPLVL 318
>02_02_0479 -
10775382-10775656,10776513-10777535,10777725-10778461,
10779008-10779155,10779331-10779856
Length = 902
Score = 25.4 bits (53), Expect = 8.0
Identities = 12/27 (44%), Positives = 16/27 (59%)
Frame = +1
Query: 136 KLREEGRLANDGCIVQYRPEHGPLDAW 216
KL++ RL+ D C+ R G LDAW
Sbjct: 602 KLQKIQRLSIDVCMNNVRKNMGGLDAW 628
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,148,361
Number of Sequences: 37544
Number of extensions: 153475
Number of successful extensions: 456
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 449
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 455
length of database: 14,793,348
effective HSP length: 71
effective length of database: 12,127,724
effective search space used: 327448548
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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